From 230416d0ab00059b8cb787e242f9e4d842568d7c Mon Sep 17 00:00:00 2001 From: Helge Hecht Date: Thu, 5 Oct 2023 08:13:30 +0000 Subject: [PATCH] Update tools.yml with recetox and ms tools --- tools.yml | 14 ++++++++++++++ 1 file changed, 14 insertions(+) diff --git a/tools.yml b/tools.yml index bd6fcb9..bce608b 100644 --- a/tools.yml +++ b/tools.yml @@ -2359,6 +2359,10 @@ tools: mem: 32 toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_retcor/abims_xcms_retcor/.*: mem: 32 + toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/abims_xcms_group/.*: + mem: 32 + toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_merge/abims_xcms_merge/.*: + mem: 32 toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/.*: cores: 5 toolshed.g2.bx.psu.edu/repos/lparsons/htseq_count/htseq_count/.*: @@ -2402,8 +2406,18 @@ tools: mem: 12 env: _JAVA_OPTIONS: -Xmx{int(mem)}G -Xms1G + toolshed.g2.bx.psu.edu/repos/recetox/ramclustr/ramclustr/.*: + cores: 4 toolshed.g2.bx.psu.edu/repos/recetox/recetox_aplcms_align_features/recetox_aplcms_align_features/.*: cores: 4 + toolshed.g2.bx.psu.edu/repos/recetox/recetox_aplcms_compute_clusters/recetox_aplcms_compute_clusters/.*: + mem: 16 + toolshed.g2.bx.psu.edu/repos/recetox/recetox_aplcms_generate_feature_table/recetox_aplcms_generate_feature_table/.*: + mem: 16 + toolshed.g2.bx.psu.edu/repos/recetox/recetox_aplcms_recover_weaker_signals/recetox_aplcms_recover_weaker_signals/.*: + mem: 16 + toolshed.g2.bx.psu.edu/repos/recetox/recetox_aplcms_remove_noise/recetox_aplcms_remove_noise/.*: + mem: 16 toolshed.g2.bx.psu.edu/repos/rnateam/blockbuster/blockbuster/.*: mem: 64 toolshed.g2.bx.psu.edu/repos/rnateam/blockclust/blockclust/.*: