diff --git a/metadata/workflowhub.yml b/metadata/workflowhub.yml
index 7ec8869cd5b20c..7696afcd5ca958 100644
--- a/metadata/workflowhub.yml
+++ b/metadata/workflowhub.yml
@@ -1,4 +1,5 @@
 assembly/ERGA-post-assembly-QC/main-workflow: '1127'
+assembly/assembly-decontamination/main-workflow: '1359'
 assembly/assembly-quality-control/main-workflow: '1128'
 assembly/assembly-with-preprocessing/assembly-with-preprocessing: '1132'
 assembly/assembly-with-preprocessing/assembly-with-preprocessing-and-sra-download: '1197'
@@ -18,6 +19,7 @@ assembly/largegenome/galaxy-workflow-racon-polish-with-long-reads-x4: '1154'
 assembly/largegenome/galaxy-workflow-trim-and-filter-reads: '1144'
 assembly/metagenomics-assembly/metagenomics-assembly-tutorial-workflow: '1120'
 assembly/metagenomics-assembly/workflow-generate-dataset-for-assembly-tutorial: '1116'
+assembly/mitochondrion-assembly/main-workflow: '1360'
 assembly/mrsa-illumina/main-workflow: '1135'
 assembly/mrsa-nanopore/main-workflow: '1178'
 assembly/unicycler-assembly/unicycler: '1182'