diff --git a/events/tracks/gta2024-micorbiome.md b/events/tracks/gta2024-microbiome.md similarity index 67% rename from events/tracks/gta2024-micorbiome.md rename to events/tracks/gta2024-microbiome.md index bd8dbcb8fd1a2b..5dbdf7dde0268f 100644 --- a/events/tracks/gta2024-micorbiome.md +++ b/events/tracks/gta2024-microbiome.md @@ -1,5 +1,7 @@ --- layout: event-track +redirect_from: +- /events/tracks/gta2024-micorbiome title: Microbiome analysis description: This track explains the capability to analyze microbiome data using Galaxy, covering essential tasks such as amplicon analysis and its visualization. It progresses to more advanced topics, including assembly and binning - the requirements for reconstructing Metagenome-Assembled Genomes (MAGs) from microbiome samples, and finally extends to complex analyses like metatranscriptome studies and pathogen detection. @@ -19,12 +21,17 @@ contributions: - RZ9082 program: - - section: "Basics" + - section: "Introduction" description: | - Introduction to Microbiome Analysis. If you encounter any issue please ask us in this Slack channel. + Introduction to Microbiome Analysis. tutorials: - name: introduction topic: microbiome + + - section: "Metabarcoding" + description: | + Identify and analyze the diversity of species in environmental samples by amplifying and sequencing specific genetic markers + tutorials: - name: dada-16S topic: microbiome - type: custom @@ -32,30 +39,29 @@ program: description: | Tutorial (will come soon) - - section: "Genome recovery" + - section: "Metagenomics" description: | - Genome recovery. If you encounter any issue please ask us in this Slack channel. + Assemble, bin, and profile the taxonomic diversity using collective DNA from environmental samples tutorials: - name: metagenomics-assembly topic: microbiome - name: metagenomics-binning topic: microbiome - - - section: "Read-based based analysis" - description: | - Read-based based analysis. If you encounter any issue please ask us in this Slack channel. - tutorials: - name: taxonomic-profiling topic: microbiome - - type: custom - name: diversity + - name: diversity topic: microbiome + + - section: "Metatranscriptomics" + description: | + Profile the taxonomic diversity and the functional processes from collective RNA from environmental samples + tutorials: - name: metatranscriptomics topic: microbiome - section: "Pathogen detection" description: | - Pathogen detection. If you encounter any issue please ask us in this Slack channel. + Detect and track pathogens from metagenomic Nanopore sequencing tutorials: - name: pathogen-detection-from-nanopore-foodborne-data topic: microbiome