diff --git a/topics/microbiome/tutorials/visualisation-ampvis/tutorial.md b/topics/microbiome/tutorials/visualisation-ampvis/tutorial.md index 0dd803568daa0..9cefa264f5a11 100644 --- a/topics/microbiome/tutorials/visualisation-ampvis/tutorial.md +++ b/topics/microbiome/tutorials/visualisation-ampvis/tutorial.md @@ -78,7 +78,7 @@ First of all you can put your data into - {% tool [rarefaction curve](toolshed.g2.bx.psu.edu/repos/iuc/ampvis2_rarecurve/ampvis2_rarecurve/2.8.9+galaxy0) %} - a [rarefaction curve](https://usegalaxy.eu/root?tool_id=toolshed.g2.bx.psu.edu/repos/iuc/ampvis2_rarecurve/ampvis2_rarecurve/2.8.9+galaxy0) -to explore species richness. Then you can input your data into subsets and finally create: +to explore species richness. Then you can input your data into [subsets](https://usegalaxy.eu/root?tool_id=toolshed.g2.bx.psu.edu/repos/iuc/ampvis2_subset_samples/ampvis2_subset_samples/2.8.9+galaxy0) and finally create: - {% tool [heatmap](toolshed.g2.bx.psu.edu/repos/iuc/ampvis2_heatmap/ampvis2_heatmap/2.8.9+galaxy0) %} - a [heatmap](https://usegalaxy.eu/root?tool_id=toolshed.g2.bx.psu.edu/repos/iuc/ampvis2_heatmap/ampvis2_heatmap/2.8.9+galaxy0) - {% tool [boxplot](toolshed.g2.bx.psu.edu/repos/iuc/ampvis2_boxplot/ampvis2_boxplot/2.8.9+galaxy0) %} @@ -87,6 +87,7 @@ to explore species richness. Then you can input your data into subsets and final - an [ordination plot](https://usegalaxy.eu/root?tool_id=toolshed.g2.bx.psu.edu/repos/iuc/ampvis2_ordinate/ampvis2_ordinate/2.8.9+galaxy0) - {% tool [timeseries plot](toolshed.g2.bx.psu.edu/repos/iuc/ampvis2_timeseries/ampvis2_timeseries/2.8.9+galaxy0) %} - a [timeseries plot](https://usegalaxy.eu/root?tool_id=toolshed.g2.bx.psu.edu/repos/iuc/ampvis2_timeseries/ampvis2_timeseries/2.8.9+galaxy0) + Most of these visualisation methods are described in [Introduction to ampvis2](https://kasperskytte.github.io/ampvis2/articles/ampvis2.html#heatmap). ![overview of visualisation methods](./images/overview.png