From 3d34bc10af95463c8e9cca0bc578b4d05f7957cb Mon Sep 17 00:00:00 2001 From: mvdbeek <6804901+mvdbeek@users.noreply.github.com> Date: Wed, 5 Jun 2024 09:29:46 +0000 Subject: [PATCH] [create-pull-request] automated change --- usegalaxy.org/annotation.yml.lock | 5 + usegalaxy.org/assembly.yml.lock | 7 + usegalaxy.org/bbtools.yml.lock | 6 + .../biodiversity_data_exploration.yml.lock | 1 + usegalaxy.org/chemicaltoolbox.yml.lock | 1 + usegalaxy.org/climate_analysis.yml.lock | 3 + usegalaxy.org/collection_operations.yml.lock | 1 + usegalaxy.org/data_managers.yml.lock | 4 + usegalaxy.org/evolution.yml.lock | 1 + usegalaxy.org/fasta_fastq.yml.lock | 2 + usegalaxy.org/fastq_quality_control.yml.lock | 1 + usegalaxy.org/filter_and_sort.yml.lock | 1 + usegalaxy.org/get_data.yml.lock | 1 + usegalaxy.org/gis_data_handling.yml.lock | 5 + usegalaxy.org/graph_display_data.yml.lock | 3 + usegalaxy.org/mapping.yml.lock | 4 + usegalaxy.org/metagenomic_analysis.yml.lock | 11 ++ usegalaxy.org/qiime2.yml.lock | 152 ++++++++++++++++++ usegalaxy.org/rna_seq.yml.lock | 2 + .../sequence_contamination_filtering.yml.lock | 1 + usegalaxy.org/single_cell.yml.lock | 23 +++ usegalaxy.org/statistics.yml.lock | 1 + usegalaxy.org/text_manipulation.yml.lock | 1 + usegalaxy.org/training_metabolomics.yml.lock | 17 ++ usegalaxy.org/variant_calling.yml.lock | 2 + 25 files changed, 256 insertions(+) diff --git a/usegalaxy.org/annotation.yml.lock b/usegalaxy.org/annotation.yml.lock index 50749a1a..e56db063 100644 --- a/usegalaxy.org/annotation.yml.lock +++ b/usegalaxy.org/annotation.yml.lock @@ -229,6 +229,7 @@ tools: - 037a11682176 - 200c378d85f3 - 2c68b0c38785 + - 4839e590cb26 - 809dfc93d593 - ac8250086ac3 - ba6f87115e13 @@ -250,6 +251,7 @@ tools: owner: iuc revisions: - 02d81b994ef5 + - 42818629ec4c - 4934c0ac6197 - adc0645b945c tool_panel_section_id: annotation @@ -303,6 +305,7 @@ tools: revisions: - 45d4d26e01b5 - c147914c9f02 + - f5114c60dc95 tool_panel_section_id: annotation tool_panel_section_label: Annotation - name: sortmerna @@ -319,6 +322,7 @@ tools: revisions: - 4863b1dbe8f0 - 77cfe958b5ea + - b6ea129299ea - f61366a4a14e tool_panel_section_id: annotation tool_panel_section_label: Annotation @@ -365,6 +369,7 @@ tools: - name: repeatmodeler owner: csbl revisions: + - 4a172d211285 - 8661b2607b7e - fbe22cb3c869 tool_panel_section_id: annotation diff --git a/usegalaxy.org/assembly.yml.lock b/usegalaxy.org/assembly.yml.lock index bbb6dda4..34b23a73 100644 --- a/usegalaxy.org/assembly.yml.lock +++ b/usegalaxy.org/assembly.yml.lock @@ -76,6 +76,7 @@ tools: owner: nml revisions: - 05c394313b1c + - 99ecfdafc64f - e731ea24e48d - fd128c111ab0 tool_panel_section_id: assembly @@ -195,6 +196,7 @@ tools: - 33368fec3b70 - 7897763d14ec - b8c00ce5dfa0 + - d5887ace0dd4 tool_panel_section_id: assembly tool_panel_section_label: Assembly - name: bandage @@ -387,6 +389,7 @@ tools: revisions: - 5412142130ad - 55a53b5e308d + - 56bb29747b4d tool_panel_section_id: assembly tool_panel_section_label: Assembly - name: pairtools_parse @@ -394,6 +397,7 @@ tools: revisions: - 44cb74c154bc - b0a1f128fa15 + - d3a7b17714c1 tool_panel_section_id: assembly tool_panel_section_label: Assembly - name: pairtools_sort @@ -401,12 +405,14 @@ tools: revisions: - 8cffb8fc34f0 - 8ed44487c834 + - fdd073110081 tool_panel_section_id: assembly tool_panel_section_label: Assembly - name: pairtools_split owner: iuc revisions: - 060f0fed864e + - 39df08e91cdf - 53d73d58e105 tool_panel_section_id: assembly tool_panel_section_label: Assembly @@ -415,5 +421,6 @@ tools: revisions: - 6cbca5661205 - 81fc1418fbfb + - c20a07c9237b tool_panel_section_id: assembly tool_panel_section_label: Assembly diff --git a/usegalaxy.org/bbtools.yml.lock b/usegalaxy.org/bbtools.yml.lock index 1e34762f..3d8c89d8 100644 --- a/usegalaxy.org/bbtools.yml.lock +++ b/usegalaxy.org/bbtools.yml.lock @@ -10,12 +10,14 @@ tools: - 159b04e36791 - 1c427e24fb79 - bf0cb5dd02f2 + - d1f62024a08b tool_panel_section_id: bbtools tool_panel_section_label: BBTools - name: bbtools_bbmap owner: iuc revisions: - 3171f7f52576 + - 3f94a2e3d513 - 517464809c33 - 7f19559b8b55 - b394de3cf6e8 @@ -24,6 +26,7 @@ tools: - name: bbtools_bbmerge owner: iuc revisions: + - 1af48f9cc27b - 5d8b93c0731f - 6d084528a6f1 - 82ced0e47b9d @@ -34,6 +37,7 @@ tools: owner: iuc revisions: - 057c13b2dc42 + - 1baa4ad1ac2f - 1ef267476a17 - 3fc12917bbdb - a9329b77db78 @@ -42,6 +46,7 @@ tools: - name: bbtools_callvariants owner: iuc revisions: + - 66b138a2e74c - adec76ebc868 - df9743790176 - ee407fae3ccd @@ -53,6 +58,7 @@ tools: revisions: - 20aef74d20a1 - 654c9da47f74 + - cbc75076778f - e4fb34b79770 - eaeb387d1244 tool_panel_section_id: bbtools diff --git a/usegalaxy.org/biodiversity_data_exploration.yml.lock b/usegalaxy.org/biodiversity_data_exploration.yml.lock index 236092b2..02e8960a 100644 --- a/usegalaxy.org/biodiversity_data_exploration.yml.lock +++ b/usegalaxy.org/biodiversity_data_exploration.yml.lock @@ -6,6 +6,7 @@ tools: - name: obisindicators owner: ecology revisions: + - 393957ecc97d - 4e7c1fb5e894 tool_panel_section_id: biodiversity_data_exploration tool_panel_section_label: Biodiversity data exploration diff --git a/usegalaxy.org/chemicaltoolbox.yml.lock b/usegalaxy.org/chemicaltoolbox.yml.lock index df535e4a..127deb95 100644 --- a/usegalaxy.org/chemicaltoolbox.yml.lock +++ b/usegalaxy.org/chemicaltoolbox.yml.lock @@ -239,6 +239,7 @@ tools: - name: alphafold2 owner: galaxy-australia revisions: + - 2f7702fd0a4c - 5b85006245f3 tool_panel_section_id: chemicaltoolbox tool_panel_section_label: ChemicalToolBox diff --git a/usegalaxy.org/climate_analysis.yml.lock b/usegalaxy.org/climate_analysis.yml.lock index 22f0185a..2d9cfd1d 100644 --- a/usegalaxy.org/climate_analysis.yml.lock +++ b/usegalaxy.org/climate_analysis.yml.lock @@ -7,11 +7,13 @@ tools: owner: climate revisions: - b525b88bc941 + - efaa93ed5a79 tool_panel_section_id: climate_analysis tool_panel_section_label: Climate Analysis - name: climate_stripes owner: climate revisions: + - abdc27e01dca - c6f2435d680b tool_panel_section_id: climate_analysis tool_panel_section_label: Climate Analysis @@ -19,5 +21,6 @@ tools: owner: climate revisions: - 250554670f72 + - bd153c794da1 tool_panel_section_id: climate_analysis tool_panel_section_label: Climate Analysis diff --git a/usegalaxy.org/collection_operations.yml.lock b/usegalaxy.org/collection_operations.yml.lock index 88acad69..9cea3ce2 100644 --- a/usegalaxy.org/collection_operations.yml.lock +++ b/usegalaxy.org/collection_operations.yml.lock @@ -28,6 +28,7 @@ tools: owner: bgruening revisions: - 0046692724f9 + - 2dae863c8f42 - 6cbe2f30c2d7 - baabc30154cd - d57735dd27b0 diff --git a/usegalaxy.org/data_managers.yml.lock b/usegalaxy.org/data_managers.yml.lock index f82bb31e..f567fb64 100644 --- a/usegalaxy.org/data_managers.yml.lock +++ b/usegalaxy.org/data_managers.yml.lock @@ -61,12 +61,14 @@ tools: - name: data_manager_bowtie_index_builder owner: iuc revisions: + - 39a922d01b0d - cb157f55b4fd tool_panel_section_id: data_managers tool_panel_section_label: Data Managers - name: data_manager_kallisto_index_builder owner: iuc revisions: + - 15c2fc266540 - 4c7ebbad42cf tool_panel_section_id: data_managers tool_panel_section_label: Data Managers @@ -80,11 +82,13 @@ tools: owner: iuc revisions: - 1550b1741780 + - 898b956719ee tool_panel_section_id: data_managers tool_panel_section_label: Data Managers - name: data_manager_fetch_ncbi_taxonomy owner: devteam revisions: + - 34a5799a65fa - 6dd9e00dea95 tool_panel_section_id: data_managers tool_panel_section_label: Data Managers diff --git a/usegalaxy.org/evolution.yml.lock b/usegalaxy.org/evolution.yml.lock index dbee3cc8..8eb1f839 100644 --- a/usegalaxy.org/evolution.yml.lock +++ b/usegalaxy.org/evolution.yml.lock @@ -22,6 +22,7 @@ tools: - 24d024316465 - 524d31add34a - 563c3aa769f2 + - 70acec670c30 - 973a28be3b7f - 9b892d7f82cc - b8476e82ac20 diff --git a/usegalaxy.org/fasta_fastq.yml.lock b/usegalaxy.org/fasta_fastq.yml.lock index b93e0f62..8bf67c02 100644 --- a/usegalaxy.org/fasta_fastq.yml.lock +++ b/usegalaxy.org/fasta_fastq.yml.lock @@ -28,6 +28,7 @@ tools: - de6cebe3c043 - e4691e1589d3 - f5fdf41c08b8 + - fe74900d6dc7 tool_panel_section_id: fasta_fastq tool_panel_section_label: FASTA/FASTQ - name: flash @@ -345,6 +346,7 @@ tools: owner: peterjc revisions: - 141612f8c3e3 + - 85ef5f5a0562 tool_panel_section_id: fasta_fastq tool_panel_section_label: FASTA/FASTQ - name: umi_tools_extract diff --git a/usegalaxy.org/fastq_quality_control.yml.lock b/usegalaxy.org/fastq_quality_control.yml.lock index 04c08646..f583eab5 100644 --- a/usegalaxy.org/fastq_quality_control.yml.lock +++ b/usegalaxy.org/fastq_quality_control.yml.lock @@ -16,6 +16,7 @@ tools: owner: pjbriggs revisions: - 898b67846b47 + - b9aaed85cbd1 - d94aff5ee623 - dfa082f84068 tool_panel_section_id: fastq_quality_control diff --git a/usegalaxy.org/filter_and_sort.yml.lock b/usegalaxy.org/filter_and_sort.yml.lock index cf081c4a..50921100 100644 --- a/usegalaxy.org/filter_and_sort.yml.lock +++ b/usegalaxy.org/filter_and_sort.yml.lock @@ -7,5 +7,6 @@ tools: owner: peterjc revisions: - 7c40a1fbc82e + - bdaefd241921 tool_panel_section_id: filter_and_sort tool_panel_section_label: Filter and Sort diff --git a/usegalaxy.org/get_data.yml.lock b/usegalaxy.org/get_data.yml.lock index 9b8c8c8e..3f60648e 100644 --- a/usegalaxy.org/get_data.yml.lock +++ b/usegalaxy.org/get_data.yml.lock @@ -10,6 +10,7 @@ tools: - 248f85ff0733 - 4317d3cb6cba - 4df8de2d0e48 + - 516a54ddf218 - 653e89d73fc4 - 6591f049cf7e - 69ebb7f46e45 diff --git a/usegalaxy.org/gis_data_handling.yml.lock b/usegalaxy.org/gis_data_handling.yml.lock index 88f8c1f0..da7dd1e8 100644 --- a/usegalaxy.org/gis_data_handling.yml.lock +++ b/usegalaxy.org/gis_data_handling.yml.lock @@ -6,6 +6,7 @@ tools: - name: xarray_metadata_info owner: ecology revisions: + - 00de53d18b99 - e8650cdf092f tool_panel_section_id: gis_data_handling tool_panel_section_label: GIS Data Handling @@ -13,23 +14,27 @@ tools: owner: ecology revisions: - 6baac361495b + - b393815e4cb7 tool_panel_section_id: gis_data_handling tool_panel_section_label: GIS Data Handling - name: xarray_netcdf2netcdf owner: ecology revisions: - 1a91e551f3a9 + - c91c27b63fb2 tool_panel_section_id: gis_data_handling tool_panel_section_label: GIS Data Handling - name: xarray_coords_info owner: ecology revisions: - 6015f30a7258 + - 663e6f115a76 tool_panel_section_id: gis_data_handling tool_panel_section_label: GIS Data Handling - name: xarray_mapplot owner: ecology revisions: + - 506b6d6880ff - d7479b6dfbe8 tool_panel_section_id: gis_data_handling tool_panel_section_label: GIS Data Handling diff --git a/usegalaxy.org/graph_display_data.yml.lock b/usegalaxy.org/graph_display_data.yml.lock index 9f7a3d67..91089aef 100644 --- a/usegalaxy.org/graph_display_data.yml.lock +++ b/usegalaxy.org/graph_display_data.yml.lock @@ -27,6 +27,7 @@ tools: - name: plotly_ml_performance_plots owner: bgruening revisions: + - 1c5dcef5ce0f - 62e3a4e8c54c tool_panel_section_id: graph_display_data tool_panel_section_label: Graph/Display Data @@ -303,6 +304,7 @@ tools: revisions: - 73b8cb5bddcd - 83c573f2e73c + - a363ba287b88 tool_panel_section_id: graph_display_data tool_panel_section_label: Graph/Display Data - name: krona_text @@ -315,5 +317,6 @@ tools: owner: fubar revisions: - 0e592dcaeb7f + - 74074746ccd8 tool_panel_section_id: graph_display_data tool_panel_section_label: Graph/Display Data diff --git a/usegalaxy.org/mapping.yml.lock b/usegalaxy.org/mapping.yml.lock index 365a8f5a..2d5e0eae 100644 --- a/usegalaxy.org/mapping.yml.lock +++ b/usegalaxy.org/mapping.yml.lock @@ -23,6 +23,7 @@ tools: - 0d4acadabb04 - 749c918495f7 - c3dd1aeb7d07 + - d5ceb9f3c25b - f6877ad76b00 tool_panel_section_id: mapping tool_panel_section_label: Mapping @@ -39,6 +40,7 @@ tools: owner: devteam revisions: - 01ac0a5fedc3 + - 2477830927ec - 3fe632431b68 - 64f11cf59c6e - e188dc7a68e6 @@ -84,6 +86,7 @@ tools: - 6da3972210ee - a6ea26c1f225 - b4e6819b25ef + - cf1322aeb137 - d82648ad25a3 tool_panel_section_id: mapping tool_panel_section_label: Mapping @@ -140,6 +143,7 @@ tools: owner: iuc revisions: - 3171f7f52576 + - 3f94a2e3d513 - 517464809c33 - 7f19559b8b55 - 858a65b52cf9 diff --git a/usegalaxy.org/metagenomic_analysis.yml.lock b/usegalaxy.org/metagenomic_analysis.yml.lock index fc75c5a6..bfdd6ce9 100644 --- a/usegalaxy.org/metagenomic_analysis.yml.lock +++ b/usegalaxy.org/metagenomic_analysis.yml.lock @@ -198,6 +198,7 @@ tools: - 52a911972c02 - 7b8cb2b02978 - a58e4a43f49c + - cae017b76acb - d60df8727f59 - f947b4bb5107 - fa11922f3d91 @@ -207,6 +208,7 @@ tools: owner: iuc revisions: - 1728e5ee871a + - 32c9ea835770 - 498d57610fcd - 555ccac8a4c5 - 78faebd0879c @@ -222,6 +224,7 @@ tools: - 4d89978c6188 - 5b5a7af9fbb4 - 63f86089423e + - 65db807336bc - 76d3d2b10738 - 79212a309499 - 7c2100246a2f @@ -231,6 +234,7 @@ tools: owner: iuc revisions: - 04144473e59e + - 073608a50ac3 - 1bc3657cd694 - 5b752525bd6f - 7136e9ab70db @@ -248,12 +252,14 @@ tools: - a9f4a217dcd6 - addaf9d22850 - ca73bbac615a + - e8fba04706d3 - f732237754fc tool_panel_section_id: metagenomic_analysis tool_panel_section_label: Metagenomic Analysis - name: dada2_dada owner: iuc revisions: + - 00f5005840fa - 18a502a9d287 - 1c35dadbe76f - 2222f08c8316 @@ -269,6 +275,7 @@ tools: - 04c15826a0b8 - 0776d824d896 - 39638e0aff59 + - 5fe3edf19b9c - 75403243703a - 8c202e741d68 - afdfa35a89d9 @@ -280,6 +287,7 @@ tools: revisions: - 1c9b3bcd4261 - 43c99742158b + - 75c8945b0da2 - 8470de786d47 - 99c6929236fa - 9ccec6ed8e82 @@ -293,6 +301,7 @@ tools: - 0b884b080bb6 - 1d75bd0595e2 - 306a40d4bb8f + - 35176674168c - 5c865a382933 - 69900ffd3b8e - 84743da21318 @@ -307,6 +316,7 @@ tools: - 4cc834cce4fb - 7d28da5e9e27 - 9058d8943303 + - a7817705348e - d943081510da - f74c56549143 tool_panel_section_id: metagenomic_analysis @@ -485,6 +495,7 @@ tools: - name: combine_metaphlan2_humann2 owner: bebatut revisions: + - 662a334004b4 - fdfb35745104 tool_panel_section_id: metagenomic_analysis tool_panel_section_label: Metagenomic Analysis diff --git a/usegalaxy.org/qiime2.yml.lock b/usegalaxy.org/qiime2.yml.lock index 8a1bd1b7..86f0137b 100644 --- a/usegalaxy.org/qiime2.yml.lock +++ b/usegalaxy.org/qiime2.yml.lock @@ -7,23 +7,27 @@ tools: owner: q2d2 revisions: - a0a48c15c573 + - c4a4ba3c7a9c tool_panel_section_id: qiime2 tool_panel_section_label: QIIME2 - name: qiime2__alignment__mafft_add owner: q2d2 revisions: - 442d1a046fa6 + - 51e7e9d2c302 tool_panel_section_id: qiime2 tool_panel_section_label: QIIME2 - name: qiime2__alignment__mask owner: q2d2 revisions: + - 1d37aa0aed4f - e8bee857dc0d tool_panel_section_id: qiime2 tool_panel_section_label: QIIME2 - name: qiime2__composition__add_pseudocount owner: q2d2 revisions: + - cd98e4bb92ee - f92a9f40c7e1 tool_panel_section_id: qiime2 tool_panel_section_label: QIIME2 @@ -31,23 +35,27 @@ tools: owner: q2d2 revisions: - e3a9e7cb7b77 + - f072d901c63c tool_panel_section_id: qiime2 tool_panel_section_label: QIIME2 - name: qiime2__composition__ancombc owner: q2d2 revisions: + - 4b71e36cc3d2 - fe99db171ce5 tool_panel_section_id: qiime2 tool_panel_section_label: QIIME2 - name: qiime2__composition__tabulate owner: q2d2 revisions: + - 45a7de813cd5 - 54caf7f5c410 tool_panel_section_id: qiime2 tool_panel_section_label: QIIME2 - name: qiime2__cutadapt__demux_paired owner: q2d2 revisions: + - 9b5a775806be - c6a8822e19f2 tool_panel_section_id: qiime2 tool_panel_section_label: QIIME2 @@ -55,11 +63,13 @@ tools: owner: q2d2 revisions: - d8851a5b9360 + - fcb0c9bd84a3 tool_panel_section_id: qiime2 tool_panel_section_label: QIIME2 - name: qiime2__cutadapt__trim_paired owner: q2d2 revisions: + - b2b61aecb444 - b7fc07bacdb2 tool_panel_section_id: qiime2 tool_panel_section_label: QIIME2 @@ -67,11 +77,13 @@ tools: owner: q2d2 revisions: - 42cd76be2cbf + - 9a9d639bd2ec tool_panel_section_id: qiime2 tool_panel_section_label: QIIME2 - name: qiime2__dada2__denoise_ccs owner: q2d2 revisions: + - a22807aaff34 - d777f76179b6 tool_panel_section_id: qiime2 tool_panel_section_label: QIIME2 @@ -79,29 +91,34 @@ tools: owner: q2d2 revisions: - 06bacd08bb47 + - d2bf79e0bd52 tool_panel_section_id: qiime2 tool_panel_section_label: QIIME2 - name: qiime2__dada2__denoise_pyro owner: q2d2 revisions: + - 16c1fce384ab - 377a0bd6edd4 tool_panel_section_id: qiime2 tool_panel_section_label: QIIME2 - name: qiime2__dada2__denoise_single owner: q2d2 revisions: + - a2112f424054 - e7812ca89033 tool_panel_section_id: qiime2 tool_panel_section_label: QIIME2 - name: qiime2__deblur__denoise_16s owner: q2d2 revisions: + - ab9ed5ac604c - b883cbea5623 tool_panel_section_id: qiime2 tool_panel_section_label: QIIME2 - name: qiime2__deblur__denoise_other owner: q2d2 revisions: + - 27ba31d2202b - 61ee71aacf1c tool_panel_section_id: qiime2 tool_panel_section_label: QIIME2 @@ -109,17 +126,20 @@ tools: owner: q2d2 revisions: - 0be892a57bfe + - e02092a0b2db tool_panel_section_id: qiime2 tool_panel_section_label: QIIME2 - name: qiime2__demux__emp_paired owner: q2d2 revisions: - 551e9187951c + - a9ce731fab29 tool_panel_section_id: qiime2 tool_panel_section_label: QIIME2 - name: qiime2__demux__emp_single owner: q2d2 revisions: + - 19e2495b60e8 - 75b07a996ac0 tool_panel_section_id: qiime2 tool_panel_section_label: QIIME2 @@ -127,41 +147,48 @@ tools: owner: q2d2 revisions: - 0e5d4dc5c23e + - b507d1f2196c tool_panel_section_id: qiime2 tool_panel_section_label: QIIME2 - 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4fb2b5e9beba + - 9c9e6b7d7286 tool_panel_section_id: qiime2 tool_panel_section_label: QIIME2 - name: qiime2__vsearch__fastq_stats owner: q2d2 revisions: - 55e1a7184edd + - 6acd7854064f tool_panel_section_id: qiime2 tool_panel_section_label: QIIME2 - name: qiime2__vsearch__merge_pairs owner: q2d2 revisions: + - 4756c43a7181 - f455181d916d tool_panel_section_id: qiime2 tool_panel_section_label: QIIME2 @@ -949,17 +1097,20 @@ tools: owner: q2d2 revisions: - 2ecd644cdfcf + - 40ea1722fbab tool_panel_section_id: qiime2 tool_panel_section_label: QIIME2 - name: qiime2__vsearch__uchime_ref owner: q2d2 revisions: - 7dbbd990440e + - f13c03b34e2d tool_panel_section_id: qiime2 tool_panel_section_label: QIIME2 - name: qiime2_core__tools__export owner: q2d2 revisions: + - 37e37518cad1 - ddff0f6d5740 - f47ed6c69f5d tool_panel_section_id: qiime2 @@ -969,5 +1120,6 @@ tools: revisions: - 10447a4b0cc3 - 18c6b2b6740f + - f9e68fa06585 tool_panel_section_id: qiime2 tool_panel_section_label: QIIME2 diff --git a/usegalaxy.org/rna_seq.yml.lock b/usegalaxy.org/rna_seq.yml.lock index 7638618b..757f6130 100644 --- a/usegalaxy.org/rna_seq.yml.lock +++ b/usegalaxy.org/rna_seq.yml.lock @@ -70,6 +70,7 @@ tools: - 8eb8750070d4 - 914cfcba0ec8 - ae618321f34a + - cbf488da3b2c - cef79931dda5 - eba36e001f45 tool_panel_section_id: rna_seq @@ -168,6 +169,7 @@ tools: - name: htseq_count owner: lparsons revisions: + - 4418229c501e - 67b0b160903a - 916cb26bd9d3 tool_panel_section_id: rna_seq diff --git a/usegalaxy.org/sequence_contamination_filtering.yml.lock b/usegalaxy.org/sequence_contamination_filtering.yml.lock index f60e5fe7..051ec34f 100644 --- a/usegalaxy.org/sequence_contamination_filtering.yml.lock +++ b/usegalaxy.org/sequence_contamination_filtering.yml.lock @@ -7,6 +7,7 @@ tools: owner: iuc revisions: - 3cdb96f2855d + - 49f8eae39606 tool_panel_section_id: sequence_contamination_filtering tool_panel_section_label: Sequence Contamination Filtering - name: ncbi_fcs_adaptor diff --git a/usegalaxy.org/single_cell.yml.lock b/usegalaxy.org/single_cell.yml.lock index 88b1b941..384848c1 100644 --- a/usegalaxy.org/single_cell.yml.lock +++ b/usegalaxy.org/single_cell.yml.lock @@ -13,6 +13,7 @@ tools: - 9a169729c9f9 - 9b0cdb8cf6be - aa0c474463c2 + - f7446fd8d5e7 tool_panel_section_id: single_cell tool_panel_section_label: Single-cell - name: scanpy_inspect @@ -25,6 +26,7 @@ tools: - 9d33775ec67d - c5d3684f7c4c - e4c99c83dfbf + - f54f0f0598ad tool_panel_section_id: single_cell tool_panel_section_label: Single-cell - name: scanpy_filter @@ -36,6 +38,7 @@ tools: - 5511647110ff - a03ff8633507 - b409c2486353 + - d636ce5cde16 - f87ed6503715 tool_panel_section_id: single_cell tool_panel_section_label: Single-cell @@ -49,6 +52,7 @@ tools: - a407e7f8bdc1 - ab55fe8030b6 - c9cb76cf8d6c + - d844935c906c tool_panel_section_id: single_cell tool_panel_section_label: Single-cell - name: scanpy_cluster_reduce_dimension @@ -56,6 +60,7 @@ tools: revisions: - 35bc2eb568ed - 3e4e1cf73d98 + - 4d8f983cd751 - 6acb08931836 - 6f83f8fd381f - aaa5da8e73a9 @@ -72,6 +77,7 @@ tools: - 80d4e2cac903 - bf2017df9837 - c2ef03559dc6 + - c65fce500915 - d18e7a6e5cd4 tool_panel_section_id: single_cell tool_panel_section_label: Single-cell @@ -185,6 +191,7 @@ tools: - 7fd39eb52f38 - 8ed4e80e8799 - ba64b91ed2b9 + - bf1e0bdec1db - e9283529cba1 tool_panel_section_id: single_cell tool_panel_section_label: Single-cell @@ -194,6 +201,7 @@ tools: - 474a69c47184 - 7143938df06e - a1698b43abeb + - cc64914b0cf4 - d82d999fa716 tool_panel_section_id: single_cell tool_panel_section_label: Single-cell @@ -201,6 +209,7 @@ tools: owner: ebi-gxa revisions: - 1e9616772e16 + - 3027cb62adbd - 3a4564b9d685 - 6b97ffba31da tool_panel_section_id: single_cell @@ -210,6 +219,7 @@ tools: revisions: - 2861ca3bfe4d - 5c62f39aab8f + - 64dd8bb151e1 - 82bd7bf93454 - ae467daae2f7 tool_panel_section_id: single_cell @@ -219,6 +229,7 @@ tools: revisions: - 22f2957da902 - 2b6913c840bf + - 4cc9362782b4 - f86b2c3bc459 tool_panel_section_id: single_cell tool_panel_section_label: Single-cell @@ -226,6 +237,7 @@ tools: owner: ebi-gxa revisions: - 04bdc69f00d7 + - 4428dba93375 - 59028945c857 - 988edd5fa902 - c4f7fb2b1f70 @@ -234,6 +246,7 @@ tools: - name: scanpy_compute_graph owner: ebi-gxa revisions: + - 22bd5861706d - 3cf0177ed87e - 5ec3b715809c - 6417cccad133 @@ -246,6 +259,7 @@ tools: - 181d61d2f3cd - 384cacc40611 - a147dce191e9 + - abdb61e4afa3 - fe727a9496ea tool_panel_section_id: single_cell tool_panel_section_label: Single-cell @@ -256,6 +270,7 @@ tools: - ad70b3552c99 - bd4a244faeb8 - e31937baa330 + - ea91cfd0444e tool_panel_section_id: single_cell tool_panel_section_label: Single-cell - name: scanpy_find_cluster @@ -263,6 +278,7 @@ tools: revisions: - 15e8a4c60418 - 2ccd9f9e2cd0 + - 36735850e461 - 621d7d7a605f - 8dc3d8941217 tool_panel_section_id: single_cell @@ -274,12 +290,14 @@ tools: - 7042ce140caa - 81c34e67f262 - a57c0538e56b + - d8f5224005bb tool_panel_section_id: single_cell tool_panel_section_label: Single-cell - name: scanpy_plot_embed owner: ebi-gxa revisions: - 35f6611fb8c3 + - 7d5c97823f8b - 9fafbfcdee0d - a71086d2e55f tool_panel_section_id: single_cell @@ -290,12 +308,14 @@ tools: - 31e5e6d606ef - 53a251c6d991 - 825dfd66e3fb + - a4774b7b2e85 tool_panel_section_id: single_cell tool_panel_section_label: Single-cell - name: scanpy_parameter_iterator owner: ebi-gxa revisions: - 4e4420ed5292 + - 73d43034c860 - a8c73996ac50 - b9dd12ab0550 tool_panel_section_id: single_cell @@ -303,6 +323,7 @@ tools: - name: scanpy_read_10x owner: ebi-gxa revisions: + - 078aa23c9374 - 4d13979de6ee - 9afcfcd1d215 - c8391a25dee3 @@ -314,6 +335,7 @@ tools: - 2cef3539f420 - 3111bcf039dd - 5bea4f3c4edf + - c354af93f567 tool_panel_section_id: single_cell tool_panel_section_label: Single-cell - name: gtf2gene_list @@ -373,6 +395,7 @@ tools: - name: scanpy_regress_variable owner: ebi-gxa revisions: + - 0bab2ae44e7a - 1200b55768ce tool_panel_section_id: single_cell tool_panel_section_label: Single-cell diff --git a/usegalaxy.org/statistics.yml.lock b/usegalaxy.org/statistics.yml.lock index 3fc3b20b..4a22397c 100644 --- a/usegalaxy.org/statistics.yml.lock +++ b/usegalaxy.org/statistics.yml.lock @@ -138,6 +138,7 @@ tools: - name: landmark_registration owner: imgteam revisions: + - 02aa2873e67d - b0503eec7bd6 tool_panel_section_id: statistics tool_panel_section_label: Statistics diff --git a/usegalaxy.org/text_manipulation.yml.lock b/usegalaxy.org/text_manipulation.yml.lock index d767ea87..e2eaa181 100644 --- a/usegalaxy.org/text_manipulation.yml.lock +++ b/usegalaxy.org/text_manipulation.yml.lock @@ -33,6 +33,7 @@ tools: owner: bgruening revisions: - 054483e27a35 + - 468c71dac78a - af5eccf83605 - bfdc6a7ffd3a tool_panel_section_id: text_manipulation diff --git a/usegalaxy.org/training_metabolomics.yml.lock b/usegalaxy.org/training_metabolomics.yml.lock index d86d423b..56434614 100644 --- a/usegalaxy.org/training_metabolomics.yml.lock +++ b/usegalaxy.org/training_metabolomics.yml.lock @@ -13,29 +13,34 @@ tools: owner: lecorguille revisions: - 11ab2081bd4a + - 12def6edac2f tool_panel_section_id: metabolomics tool_panel_section_label: Metabolomics - name: xcms_fillpeaks owner: lecorguille revisions: - 26d77e9ceb49 + - bb9ee352fce0 tool_panel_section_id: metabolomics tool_panel_section_label: Metabolomics - name: xcms_group owner: lecorguille revisions: + - 2b676d5eb848 - d45a786cbc40 tool_panel_section_id: metabolomics tool_panel_section_label: Metabolomics - name: xcms_merge owner: lecorguille revisions: + - 58b5a4b6e1da - 5bd125a3f3b0 tool_panel_section_id: metabolomics tool_panel_section_label: Metabolomics - name: xcms_retcor owner: lecorguille revisions: + - 8242376d9f35 - aa252eec9229 tool_panel_section_id: metabolomics tool_panel_section_label: Metabolomics @@ -43,6 +48,7 @@ tools: owner: lecorguille revisions: - b02d1992a43a + - f5d51091cf84 tool_panel_section_id: metabolomics tool_panel_section_label: Metabolomics - name: matchms @@ -54,12 +60,14 @@ tools: - name: matchms_filtering owner: recetox revisions: + - 07cac38cbd29 - 357df6c47d92 tool_panel_section_id: metabolomics tool_panel_section_label: Metabolomics - name: matchms_formatter owner: recetox revisions: + - 6501d0287dcd - 715fe77be601 tool_panel_section_id: metabolomics tool_panel_section_label: Metabolomics @@ -67,17 +75,20 @@ tools: owner: recetox revisions: - 2ec9253a647e + - da7722f665f4 tool_panel_section_id: metabolomics tool_panel_section_label: Metabolomics - name: ramclustr_define_experiment owner: recetox revisions: - 25625114618e + - f2c1d0bbb074 tool_panel_section_id: metabolomics tool_panel_section_label: Metabolomics - name: riassigner owner: recetox revisions: + - af25aa61c611 - c702620c22b1 - f6bf8f1f3224 tool_panel_section_id: metabolomics @@ -85,12 +96,14 @@ tools: - name: waveica owner: recetox revisions: + - 071a424241ec - b77023c41c76 tool_panel_section_id: metabolomics tool_panel_section_label: Metabolomics - name: camera_annotate owner: lecorguille revisions: + - 4b9ab71be05e - 512c2b701d96 tool_panel_section_id: metabolomics tool_panel_section_label: Metabolomics @@ -98,18 +111,21 @@ tools: owner: lecorguille revisions: - 94eb263cfab4 + - cdab04a1d1d7 tool_panel_section_id: metabolomics tool_panel_section_label: Metabolomics - name: xcms_plot_chromatogram owner: lecorguille revisions: - 024974037c4e + - 8846a03995d3 tool_panel_section_id: metabolomics tool_panel_section_label: Metabolomics - name: xcms_summary owner: lecorguille revisions: - 018a9771de28 + - 2a2850fdf29e tool_panel_section_id: metabolomics tool_panel_section_label: Metabolomics - name: idchoice @@ -122,5 +138,6 @@ tools: owner: melpetera revisions: - a31f3f802b2b + - ec75de7f1e08 tool_panel_section_id: metabolomics tool_panel_section_label: Metabolomics diff --git a/usegalaxy.org/variant_calling.yml.lock b/usegalaxy.org/variant_calling.yml.lock index c9bbac60..33d58b7a 100644 --- a/usegalaxy.org/variant_calling.yml.lock +++ b/usegalaxy.org/variant_calling.yml.lock @@ -33,6 +33,7 @@ tools: owner: blankenberg revisions: - 07e71cf6c8ef + - 6be51647d31a tool_panel_section_id: variant_calling tool_panel_section_label: Variant Calling - name: snpsift @@ -187,6 +188,7 @@ tools: owner: crs4 revisions: - 45af4a9748cf + - 5d60331757d3 tool_panel_section_id: variant_calling tool_panel_section_label: Variant Calling - name: gatk4_mutect2