From 22fc627c5bdf4ab12a47fc7fd90246513f6529a0 Mon Sep 17 00:00:00 2001 From: Lucille Delisle Date: Tue, 21 Nov 2023 13:08:58 +0100 Subject: [PATCH] update artbio bgruening chemteam csbl devteam galaxyp iuc lldelisle lparsons nml --- usegalaxy.org/annotation.yml.lock | 3 ++- usegalaxy.org/assembly.yml.lock | 2 ++ usegalaxy.org/genome_diversity.yml.lock | 1 + usegalaxy.org/get_data.yml.lock | 1 + usegalaxy.org/metagenomic_analysis.yml.lock | 1 + usegalaxy.org/ncbi_blast_.yml.lock | 1 + usegalaxy.org/sam_bam.yml.lock | 18 ++++++++++++++++++ usegalaxy.org/single_cell.yml.lock | 12 +++++++++--- 8 files changed, 35 insertions(+), 4 deletions(-) diff --git a/usegalaxy.org/annotation.yml.lock b/usegalaxy.org/annotation.yml.lock index 9b24c86f..5e2a3e58 100644 --- a/usegalaxy.org/annotation.yml.lock +++ b/usegalaxy.org/annotation.yml.lock @@ -54,6 +54,7 @@ tools: revisions: - 0d243f458b53 - 1e62c28ba91d + - 2a5b8b9936bf - 4048d82f0c88 - 41030a6c03b7 - 46ae58b1d792 @@ -61,7 +62,6 @@ tools: - 94170eee0ad8 - cf13a1e03e5b - e4bd1e99bacf - - 2a5b8b9936bf tool_panel_section_id: annotation tool_panel_section_label: Annotation - name: exonerate @@ -361,6 +361,7 @@ tools: owner: csbl revisions: - 8661b2607b7e + - fbe22cb3c869 tool_panel_section_id: annotation tool_panel_section_label: Annotation - name: red diff --git a/usegalaxy.org/assembly.yml.lock b/usegalaxy.org/assembly.yml.lock index 3f08ac6c..5297e19a 100644 --- a/usegalaxy.org/assembly.yml.lock +++ b/usegalaxy.org/assembly.yml.lock @@ -75,6 +75,7 @@ tools: revisions: - 05c394313b1c - e731ea24e48d + - fd128c111ab0 tool_panel_section_id: assembly tool_panel_section_label: Assembly - name: miniasm @@ -174,6 +175,7 @@ tools: - name: spades owner: nml revisions: + - 33368fec3b70 - 7897763d14ec - b8c00ce5dfa0 tool_panel_section_id: assembly diff --git a/usegalaxy.org/genome_diversity.yml.lock b/usegalaxy.org/genome_diversity.yml.lock index 1924fd72..c2939ef2 100644 --- a/usegalaxy.org/genome_diversity.yml.lock +++ b/usegalaxy.org/genome_diversity.yml.lock @@ -6,6 +6,7 @@ tools: - name: raxml owner: iuc revisions: + - b1e68bbe4cef - ea30d3089354 tool_panel_section_id: genome_diversity tool_panel_section_label: Genome Diversity diff --git a/usegalaxy.org/get_data.yml.lock b/usegalaxy.org/get_data.yml.lock index aac74e55..ee7c54aa 100644 --- a/usegalaxy.org/get_data.yml.lock +++ b/usegalaxy.org/get_data.yml.lock @@ -20,6 +20,7 @@ tools: - aad3885b3216 - c441583adae5 - e08a7ad4378b + - e407b9da183a - f5ea3ce9b9b0 tool_panel_section_id: get_data tool_panel_section_label: Get Data diff --git a/usegalaxy.org/metagenomic_analysis.yml.lock b/usegalaxy.org/metagenomic_analysis.yml.lock index 511b9d3a..de982667 100644 --- a/usegalaxy.org/metagenomic_analysis.yml.lock +++ b/usegalaxy.org/metagenomic_analysis.yml.lock @@ -388,6 +388,7 @@ tools: owner: nml revisions: - 2fd4d4c9c5c2 + - 3b22de20bd4b - da787fc8b740 tool_panel_section_id: metagenomic_analysis tool_panel_section_label: Metagenomic Analysis diff --git a/usegalaxy.org/ncbi_blast_.yml.lock b/usegalaxy.org/ncbi_blast_.yml.lock index 6063c0cf..8222b9a2 100644 --- a/usegalaxy.org/ncbi_blast_.yml.lock +++ b/usegalaxy.org/ncbi_blast_.yml.lock @@ -10,6 +10,7 @@ tools: - 2889433c7ae1 - 5edc472ec434 - a52d2d93e595 + - d999e774072a - e25d3acf6e68 tool_panel_section_id: ncbi_blast_ tool_panel_section_label: NCBI BLAST+ diff --git a/usegalaxy.org/sam_bam.yml.lock b/usegalaxy.org/sam_bam.yml.lock index 0de993d4..3762632e 100644 --- a/usegalaxy.org/sam_bam.yml.lock +++ b/usegalaxy.org/sam_bam.yml.lock @@ -7,6 +7,7 @@ tools: owner: devteam revisions: - 6c2c1836728b + - a577ea614bed - e613c1ad4c4c tool_panel_section_id: sam_bam tool_panel_section_label: SAM/BAM @@ -14,6 +15,7 @@ tools: owner: devteam revisions: - 9da0311ab1dd + - b61f5d6a7f25 - fa7ad9b89f4a tool_panel_section_id: sam_bam tool_panel_section_label: SAM/BAM @@ -22,6 +24,7 @@ tools: revisions: - 22970df7a40e - fe34990e5ce7 + - fefd89ab563c tool_panel_section_id: sam_bam tool_panel_section_label: SAM/BAM - name: samtool_filter2 @@ -36,6 +39,7 @@ tools: revisions: - 10184eaa85fc - 88eedb4abea0 + - a53efedba9e7 tool_panel_section_id: sam_bam tool_panel_section_label: SAM/BAM - name: samtools_idxstats @@ -43,6 +47,7 @@ tools: revisions: - 7a6034296ae9 - 7def34e6cf4d + - fa5d3e61e429 tool_panel_section_id: sam_bam tool_panel_section_label: SAM/BAM - name: sam_to_bam @@ -59,12 +64,14 @@ tools: - 06dc50b7b711 - 3d873744df7e - 92ec40abcdcf + - c89806670ab9 tool_panel_section_id: sam_bam tool_panel_section_label: SAM/BAM - name: samtools_bedcov owner: devteam revisions: - 46c6639921f1 + - 6856f8a01905 - 9149ad20699a tool_panel_section_id: sam_bam tool_panel_section_label: SAM/BAM @@ -73,6 +80,7 @@ tools: revisions: - 135c85f4cfaf - bcedabb53ddf + - bd850490c7f1 tool_panel_section_id: sam_bam tool_panel_section_label: SAM/BAM - name: samtools_stats @@ -83,6 +91,7 @@ tools: - 24c5d43cb545 - 3a0efe14891f - 47035d167365 + - fed4aa48ba09 tool_panel_section_id: sam_bam tool_panel_section_label: SAM/BAM - name: samtools_slice_bam @@ -90,6 +99,7 @@ tools: revisions: - 344fc91e1bfd - a4a10c7924d1 + - b5c88b7b153e tool_panel_section_id: sam_bam tool_panel_section_label: SAM/BAM - name: samtools_reheader @@ -97,6 +107,7 @@ tools: revisions: - 30388d878f81 - bb8cfc6f6e0c + - d7b4851d1971 - db000c6007a0 tool_panel_section_id: sam_bam tool_panel_section_label: SAM/BAM @@ -203,11 +214,13 @@ tools: - 2ee8dc1aeda9 - 44de678a44c4 - 56faa6a57e50 + - 971dc85e9441 tool_panel_section_id: sam_bam tool_panel_section_label: SAM/BAM - name: samtools_fastx owner: iuc revisions: + - 66e23b11feae - 720217c23995 - a8d69aee190e - b3d99709fe1a @@ -219,6 +232,7 @@ tools: - 41e36c99a008 - 595ae1ba934a - bc0cc7bfbfe9 + - e5ece8fa99de tool_panel_section_id: sam_bam tool_panel_section_label: SAM/BAM - name: samtools_markdup @@ -227,6 +241,7 @@ tools: - 83b8e36e9cbe - 887e02a45734 - a312a0fdaf31 + - a389f74c3630 - b5527cc104ab - ce32171c6d44 - d0a568e1904b @@ -236,6 +251,7 @@ tools: owner: iuc revisions: - 36677f429310 + - 65a38e8c8e2a - 740ce0a18f0d - 8890e2d4c068 - b40e2d865d52 @@ -253,6 +269,7 @@ tools: revisions: - 0dbf49c414ae - 5826298f6a73 + - 6be888be75f9 - b01db2684fa5 - b72793637686 - bf328cec6a42 @@ -284,6 +301,7 @@ tools: owner: iuc revisions: - 5f3ea90dc6ae + - 6a8febad1f6c - a941babb9268 tool_panel_section_id: sam_bam tool_panel_section_label: SAM/BAM diff --git a/usegalaxy.org/single_cell.yml.lock b/usegalaxy.org/single_cell.yml.lock index a086b2bb..a33f6854 100644 --- a/usegalaxy.org/single_cell.yml.lock +++ b/usegalaxy.org/single_cell.yml.lock @@ -10,12 +10,14 @@ tools: - 7647e5cd1b8b - 95777145cb92 - 9a169729c9f9 + - 9b0cdb8cf6be - aa0c474463c2 tool_panel_section_id: single_cell tool_panel_section_label: Single-cell - name: scanpy_inspect owner: iuc revisions: + - 3081ff5c84a3 - 6bd82ed14acd - 6c145a6868cc - 9d33775ec67d @@ -29,6 +31,7 @@ tools: - 2d02d9702d3a - 3c86f71498bc - 5511647110ff + - a03ff8633507 - b409c2486353 - f87ed6503715 tool_panel_section_id: single_cell @@ -38,6 +41,7 @@ tools: revisions: - 51d945eab1e1 - 5342ce58cd1e + - 94c19fb1281c - a407e7f8bdc1 - ab55fe8030b6 - c9cb76cf8d6c @@ -48,6 +52,7 @@ tools: revisions: - 35bc2eb568ed - 3e4e1cf73d98 + - 6acb08931836 - aaa5da8e73a9 - b2df381a6004 - edec35114f72 @@ -57,6 +62,7 @@ tools: owner: iuc revisions: - 215733a383f2 + - 458e8f43a775 - 73ab2ac53d06 - 80d4e2cac903 - bf2017df9837 @@ -78,10 +84,10 @@ tools: revisions: - 00712416fdaa - '499059586799' + - 93dd15e13e6a - ae1e5d9d8972 - cfc3f5a57dc6 - fb9e030ffae4 - - 93dd15e13e6a tool_panel_section_id: single_cell tool_panel_section_label: Single-cell - name: anndata_inspect @@ -90,8 +96,8 @@ tools: - 038e32885fec - 383dcb0500f9 - 39e945f0b2c1 - - ee98d611afc6 - 6f0d0c784f09 + - ee98d611afc6 tool_panel_section_id: single_cell tool_panel_section_label: Single-cell - name: anndata_manipulate @@ -109,8 +115,8 @@ tools: - 4b0adaa31c95 - 59be31ac9dc3 - 7784821452ac - - eeab712b0b99 - e98619de2776 + - eeab712b0b99 tool_panel_section_id: single_cell tool_panel_section_label: Single-cell - name: dropletutils