From f7af0972f753061ee99a6cd6b150aa7361fc9d83 Mon Sep 17 00:00:00 2001
From: mvdbeek <6804901+mvdbeek@users.noreply.github.com>
Date: Sat, 12 Oct 2024 10:01:59 +0000
Subject: [PATCH] [create-pull-request] automated change

---
 usegalaxy.org/annotation.yml.lock                | 3 +++
 usegalaxy.org/assembly.yml.lock                  | 3 ++-
 usegalaxy.org/convert_formats.yml.lock           | 1 +
 usegalaxy.org/evolution.yml.lock                 | 1 +
 usegalaxy.org/fasta_fastq.yml.lock               | 5 +++++
 usegalaxy.org/graph_display_data.yml.lock        | 2 ++
 usegalaxy.org/metagenomic_analysis.yml.lock      | 3 ++-
 usegalaxy.org/rna_analysis__deprecated_.yml.lock | 6 ++++++
 usegalaxy.org/rna_seq.yml.lock                   | 1 +
 9 files changed, 23 insertions(+), 2 deletions(-)

diff --git a/usegalaxy.org/annotation.yml.lock b/usegalaxy.org/annotation.yml.lock
index ba5c1123..18462bca 100644
--- a/usegalaxy.org/annotation.yml.lock
+++ b/usegalaxy.org/annotation.yml.lock
@@ -201,6 +201,7 @@ tools:
   revisions:
   - 3a8a37414e56
   - 7c72d5c7e449
+  - 908c494fa84e
   tool_panel_section_id: annotation
   tool_panel_section_label: Annotation
 - name: progressivemauve
@@ -359,6 +360,7 @@ tools:
 - name: freyja_demix
   owner: iuc
   revisions:
+  - 53b22b7dff19
   - c0a0e79d7196
   - fc6252e78d5b
   tool_panel_section_id: annotation
@@ -368,6 +370,7 @@ tools:
   revisions:
   - 0ceb9fb0f4ce
   - 1f89eeba299a
+  - 948903a8555d
   tool_panel_section_id: annotation
   tool_panel_section_label: Annotation
 - name: cooc_mutbamscan
diff --git a/usegalaxy.org/assembly.yml.lock b/usegalaxy.org/assembly.yml.lock
index 79119425..ae6c3175 100644
--- a/usegalaxy.org/assembly.yml.lock
+++ b/usegalaxy.org/assembly.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: false
+install_repository_dependencies: true
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tool_panel_section_label: Assembly
@@ -351,6 +351,7 @@ tools:
   - 5127a713de83
   - 5799092ffdff
   - 690c2caa367e
+  - 6ec1b853c8fd
   - 8ccbf07a5433
   - ad1149b4f795
   tool_panel_section_id: assembly
diff --git a/usegalaxy.org/convert_formats.yml.lock b/usegalaxy.org/convert_formats.yml.lock
index 9c4ad86d..819d918e 100644
--- a/usegalaxy.org/convert_formats.yml.lock
+++ b/usegalaxy.org/convert_formats.yml.lock
@@ -39,6 +39,7 @@ tools:
   owner: iuc
   revisions:
   - c24014d80001
+  - faef2b1622a3
   tool_panel_section_id: convert_formats
   tool_panel_section_label: Convert Formats
 - name: bam_to_scidx
diff --git a/usegalaxy.org/evolution.yml.lock b/usegalaxy.org/evolution.yml.lock
index 55a83b11..483f0e7a 100644
--- a/usegalaxy.org/evolution.yml.lock
+++ b/usegalaxy.org/evolution.yml.lock
@@ -12,6 +12,7 @@ tools:
 - name: fasttree
   owner: iuc
   revisions:
+  - c7e73acfa3eb
   - e005e659ae21
   - ef46a404db96
   tool_panel_section_id: evolution
diff --git a/usegalaxy.org/fasta_fastq.yml.lock b/usegalaxy.org/fasta_fastq.yml.lock
index 37ed7f32..e71d2256 100644
--- a/usegalaxy.org/fasta_fastq.yml.lock
+++ b/usegalaxy.org/fasta_fastq.yml.lock
@@ -335,6 +335,7 @@ tools:
   owner: iuc
   revisions:
   - 276b4111b253
+  - 71ad4a56c40c
   - 8250ea3a1501
   - 9570563fb686
   - a535cf1e5da4
@@ -372,6 +373,7 @@ tools:
   revisions:
   - 015cf18f4a15
   - 6a675c3aa610
+  - 7a7e33d28f62
   - 9fa7803d1c51
   - f3759eec3018
   tool_panel_section_id: fasta_fastq
@@ -381,12 +383,14 @@ tools:
   revisions:
   - 4c8a1c7d3608
   - 953b4821b183
+  - e4e12f0b3af1
   tool_panel_section_id: fasta_fastq
   tool_panel_section_label: FASTA/FASTQ
 - name: umi_tools_dedup
   owner: iuc
   revisions:
   - 04e09969d376
+  - c5a2ee07c4e1
   - f1d33e4c7bd8
   tool_panel_section_id: fasta_fastq
   tool_panel_section_label: FASTA/FASTQ
@@ -394,6 +398,7 @@ tools:
   owner: iuc
   revisions:
   - 257be15474a7
+  - 428735be9764
   - d6255614afd7
   tool_panel_section_id: fasta_fastq
   tool_panel_section_label: FASTA/FASTQ
diff --git a/usegalaxy.org/graph_display_data.yml.lock b/usegalaxy.org/graph_display_data.yml.lock
index 20e0ee2c..5cd04142 100644
--- a/usegalaxy.org/graph_display_data.yml.lock
+++ b/usegalaxy.org/graph_display_data.yml.lock
@@ -69,6 +69,7 @@ tools:
   owner: iuc
   revisions:
   - 374e9062d874
+  - 51c6ccaace7e
   - 53460afd5115
   - '566197475670'
   - ca7cb0eaad62
@@ -338,5 +339,6 @@ tools:
   - c4b77883c0a7
   - d08080933718
   - dc3fe98e7b37
+  - e188a9d25ed2
   tool_panel_section_id: graph_display_data
   tool_panel_section_label: Graph/Display Data
diff --git a/usegalaxy.org/metagenomic_analysis.yml.lock b/usegalaxy.org/metagenomic_analysis.yml.lock
index 1e87ad33..2076c841 100644
--- a/usegalaxy.org/metagenomic_analysis.yml.lock
+++ b/usegalaxy.org/metagenomic_analysis.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: false
+install_repository_dependencies: true
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tool_panel_section_label: Metagenomic Analysis
@@ -325,6 +325,7 @@ tools:
 - name: bio_hansel
   owner: iuc
   revisions:
+  - 1b88c1cf803d
   - 4deefd708943
   - e3698ac146d7
   tool_panel_section_id: metagenomic_analysis
diff --git a/usegalaxy.org/rna_analysis__deprecated_.yml.lock b/usegalaxy.org/rna_analysis__deprecated_.yml.lock
index 672a4351..cadaf24c 100644
--- a/usegalaxy.org/rna_analysis__deprecated_.yml.lock
+++ b/usegalaxy.org/rna_analysis__deprecated_.yml.lock
@@ -18,6 +18,7 @@ tools:
 - name: cuffcompare
   owner: devteam
   revisions:
+  - ad5d061fbdf2
   - e66b9b5b8580
   - f648e5180e40
   tool_panel_section_id: rna_analysis__deprecated_
@@ -25,6 +26,7 @@ tools:
 - name: cufflinks
   owner: devteam
   revisions:
+  - 6926716bbfb5
   - d080005cffe1
   - e04dbae2abe0
   tool_panel_section_id: rna_analysis__deprecated_
@@ -34,11 +36,13 @@ tools:
   revisions:
   - 679d93c99757
   - 6dc45faebc1d
+  - 93148c05136f
   tool_panel_section_id: rna_analysis__deprecated_
   tool_panel_section_label: RNA Analysis (deprecated)
 - name: cuffnorm
   owner: devteam
   revisions:
+  - 28b94cfbfdb9
   - 9a854107dbb2
   - f5b2ee725d34
   tool_panel_section_id: rna_analysis__deprecated_
@@ -46,6 +50,7 @@ tools:
 - name: cuffmerge
   owner: devteam
   revisions:
+  - 22cf48ad7b16
   - 6a6717a5f421
   - 86285ddd4512
   - cf747d1bd79a
@@ -55,6 +60,7 @@ tools:
   owner: devteam
   revisions:
   - 43221aef70e2
+  - a85acc5199c7
   - af3e173cad7f
   - d3ae7d9c2202
   tool_panel_section_id: rna_analysis__deprecated_
diff --git a/usegalaxy.org/rna_seq.yml.lock b/usegalaxy.org/rna_seq.yml.lock
index 61f5d1df..33156cfd 100644
--- a/usegalaxy.org/rna_seq.yml.lock
+++ b/usegalaxy.org/rna_seq.yml.lock
@@ -188,6 +188,7 @@ tools:
 - name: cuffmerge
   owner: devteam
   revisions:
+  - 22cf48ad7b16
   - 6a6717a5f421
   - 86285ddd4512
   - cf747d1bd79a