Configuration issue with SortMeRNA at org?

[jennaj]

I can't tell if this is a wrapper problem, or a configuration issue at ORG (can't remember if the perl warnings can be ignored or not!)

Would someone be able to help?

All versions present with the same problem but this is the one with the test example below
toolshed.g2.bx.psu.edu/repos/rnateam/sortmerna/bg_sortmerna/2.1b.6

Job API ID | bbd44e69cb8906b531e893d658d0bd69 (60731414)

test history https://usegalaxy.org/u/jen-galaxyproject/h/main-metatranscriptomics-analysis-1

stderr

/usr/local/bin/merge-paired-reads.sh: line 54: perl: command not found
/usr/local/bin/merge-paired-reads.sh: line 56: perl: command not found
/usr/local/bin/merge-paired-reads.sh: line 58: paste: command not found
The input reads file or reference file is empty, or the reads file is not in FASTA or FASTQ format, no analysis could be made.
/usr/local/bin/unmerge-paired-reads.sh: line 49: perl: command not found
/usr/local/bin/unmerge-paired-reads.sh: line 51: perl: command not found
/usr/local/bin/unmerge-paired-reads.sh: line 49: perl: command not found
/usr/local/bin/unmerge-paired-reads.sh: line 51: perl: command not found

XREF

• Tutorial https://training.galaxyproject.org/topics/microbiome/tutorials/metatranscriptomics/tutorial.html
• Workflow https://usegalaxy.org/u/jen-galaxyproject/w/main-metatranscriptomics-analysis-1
• Mem request Enhancement: Increase allocated memory for bg_sortmerna #742 (might be able to close this -- currently at -mem=3789)

Reported at https://help.galaxyproject.org/t/sortmerna-not-working-following-the-metatranscriptomic-workflow-tutorial/13517/