From 037b8674125ce6be9f19fc758fee402793a44122 Mon Sep 17 00:00:00 2001
From: Reid Wagner <wagnerr@umn.edu>
Date: Mon, 23 Sep 2024 19:14:31 -0500
Subject: [PATCH] Add TMTpro options for searchgui and peptideshaker.

---
 tools/peptideshaker/macros_basic.xml         | 4 ++--
 tools/peptideshaker/macros_modifications.xml | 2 ++
 2 files changed, 4 insertions(+), 2 deletions(-)

diff --git a/tools/peptideshaker/macros_basic.xml b/tools/peptideshaker/macros_basic.xml
index bf6317d2f..0ca8602c2 100755
--- a/tools/peptideshaker/macros_basic.xml
+++ b/tools/peptideshaker/macros_basic.xml
@@ -12,9 +12,9 @@
     </xml>
     <token name="@SEARCHGUI_MAJOR_VERSION@">4</token>
     <token name="@SEARCHGUI_VERSION@">4.0.41</token>
-    <token name="@SEARCHGUI_VERSION_SUFFIX@">1</token>
+    <token name="@SEARCHGUI_VERSION_SUFFIX@">2</token>
     <token name="@PEPTIDESHAKER_VERSION@">2.0.33</token>
-    <token name="@PEPTIDESHAKER_VERSION_SUFFIX@">1</token>
+    <token name="@PEPTIDESHAKER_VERSION_SUFFIX@">2</token>
     <xml name="citations">
         <citations>
             <citation type="doi">10.1186/1471-2105-12-70</citation>
diff --git a/tools/peptideshaker/macros_modifications.xml b/tools/peptideshaker/macros_modifications.xml
index 0c709d352..6ec529c23 100644
--- a/tools/peptideshaker/macros_modifications.xml
+++ b/tools/peptideshaker/macros_modifications.xml
@@ -136,6 +136,8 @@
       <option value="TMT 11-plex of K+6">TMT 11-plex of K+6</option>
       <option value="TMT 11-plex of K+8">TMT 11-plex of K+8</option>
       <option value="TMT 11-plex of peptide N-term">TMT 11-plex of peptide N-term</option>
+      <option value="TMTpro of K">TMTpro of K</option>
+      <option value="TMTpro of peptide N-term">TMTpro of peptide N-term</option>
       <option value="Thioacyl of peptide N-term">Thioacyl of peptide N-term</option>
       <option value="Trideuterated Methyl Ester of D">Trideuterated Methyl Ester of D</option>
       <option value="Trideuterated Methyl Ester of E">Trideuterated Methyl Ester of E</option>