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I don't know why, but compared to GoPeaks, using the same parameter set for summit, it reports only 17 peaks. Whereas GoPeaks reported 117661. Do you ever experienced such a huge discrepancy?
Hi,
I don't know why, but compared to GoPeaks, using the same parameter set for summit, it reports only 17 peaks. Whereas GoPeaks reported 117661. Do you ever experienced such a huge discrepancy?
gopeaks -c <ctr.bam> -b <treat.bam> -w 150 -m 400 -p 0.01 -t 100 -l 25
summit.py -c <ctr.bam> -b <treat.bam> -w 150 -m 400 -p 0.05 -t 100 -l 25
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