Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Hemizygous calls #90

Open
abedkurdi opened this issue Apr 4, 2024 · 2 comments
Open

Hemizygous calls #90

abedkurdi opened this issue Apr 4, 2024 · 2 comments

Comments

@abedkurdi
Copy link

Hello there,

Does Tracy decompose can find Hemizygous calls?

Thank you!
@tobiasrausch
Copy link
Member

Tracy makes no assumption about the underlying ploidy but decomposes at most 2 alleles. Thus, hemizygosity should cause most variants to be called as hom. ALT.

@abedkurdi
Copy link
Author

Thank you so much for your prompt response!
Do you have any idea how to proceed to find,if any, hemizygous call?

I appreciate any input.
Thank you!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@tobiasrausch @abedkurdi