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genomicInformation.html
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<!DOCTYPE html>
<html>
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<meta name="description" content="This page contains the genomic information of the datasets of host and pathogens implemented in TRustDB.">
<meta name="author" content="Raghav Kataria">
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<link rel="shortcut icon" href="assets/images/gallery/favicon.ico">
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<title>TRustDB - Datasets</title>
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<body>
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<div class="container-fluid pl-5">
<div class="row w-100 pl-4">
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<a class="" href="https://bioinfo.usu.edu">
<img src='assets/images/kaabil_logo.png' height="70" alt="">
</a>
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<div class="col-5">
</div>
<div class="col-auto">
<!-- <a href="index.html"><img src='assets/images/gallery/wheat_fav.png' height="40px"></a> -->
<!-- <a href="index.html"><img src='assets/images/gallery/triticum_logo.png' height="75px"></a> -->
<a href="https://www.usu.edu/"><img src='assets/images/gallery/usu-logo1.png' height="70px"></a>
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<nav class="container-fluid usu-bg pl-5">
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<div class="dropdown-menu" aria-labelledby="dropdownMenuButton">
<a class="dropdown-item" href="triticumHPI.php">Host-pathogen interactions</a>
<div class="dropdown-divider"></div>
<h6 class="ml-3" style="color:black"><b>Host</b></h6>
<a class="dropdown-item" href="transcriptionFactors.php">Transcription Factors</a>
<a class="dropdown-item" href="localizationHost.php">Subcellular Localization Annotations</a>
<a class="dropdown-item" href="geneontologyHost.php">Gene Ontology (GO) Term Annotations</a>
<a class="dropdown-item" href="domainsHost.php">Functional Domain Mappings (InterPro)</a>
<hr>
<h6 class="ml-3" style="color:black"><b>Pathogen</b></h6>
<a class="dropdown-item" href="ortholog.php"><i>Puccinia</i> species Orthologs</a>
<a class="dropdown-item" href="localization.php">Subcellular Localization Annotations</a>
<a class="dropdown-item" href="geneontology.php">Gene Ontology (GO) Term Annotations</a>
<a class="dropdown-item" href="domains.php">Functional Domain Mappings (InterPro)</a>
<a class="dropdown-item" href="effector.php">Effector Proteins</a>
<a class="dropdown-item" href="secretory.php">Secretory Proteins</a>
<a class="dropdown-item" href="effectors.php">Effector and Secretory Proteins</a>
</div>
</div>
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<div class="col-auto pt-2">
<a href="genomicInformation.html" class="rk-nav-item"><i class="fa fa-database"></i> Datasets</a>
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<a href="help.html" class="rk-nav-item"><i class="ion-document-text"></i> User guide </a>
</div>
<div class="col-auto ml-auto">
<form role="search" class="form-inline text-right">
<select class="form-control select2 mr-2" id="searchSelect">
<optgroup label="Puccinia species [Infecting Triticum]">
<option value="pug99">Puccinia graminis Ug99</option>
<option value="pgt21">Puccinia graminis 21-0</option>
</optgroup>
</select>
<input id="proteinTOsearch" placeholder="Search e.g: 'GMQ_00017T0'" class="form-control mr-2" type="text">
<a id="proteinSender" href=""><i class="fa fa-search" style="color:rgb(38, 92, 194)"></i></a>
</form>
</div>
</div>
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<!-- ==============================================================
<!-- Start right Content here -->
<!-- ============================================================== -->
<div class="wrapper">
<div class="container">
<!-- Page-Title -->
<div class="row">
<div class="col-sm-12">
<h4 class="page-title"> Information on the Proteomes of <i>T. aestivum</i> and <i>Puccinia</i> species </h4>
</div>
</div>
<div class="row">
<div class="card m-b-20 card-body" >
<p>This page contains a brief description of all the protein datasets implemented in TRustDB. From here, the users can access the original source of the proteomes used in the database, and download the required protein sequences of the species involved in stem rust disease.</p>
<hr>
<h5 style="font-size: 18px;padding-bottom: 5px;"> <i>Triticum aestivum</i></h5>
<!-- <h6><i>Triticum aestivum</i></h6> -->
<p> <i>Triticum aestivum</i> is the major staple food grain in the world. It is considered as the most important crop due to its richness in various nutrients such as carbohydrates, proteins, and minerals.
<br> Link to <i>Triticum aestivum</i> dataset: <a href="http://ftp.ensemblgenomes.org/pub/plants/release-50/fasta/triticum_aestivum/pep/" target="_blank" style="color:green;">Ensembl Plants<sup> <i class="fas fa-external-link-alt"></i></sup></a></p>
<hr>
<h5 style="font-size: 18px;padding-bottom: 5px;"> <i>Puccinia graminis</i> species</h5>
<p> The two isolates of <i>Puccinia graminis</i> : 'Ug99' and '21-0' are fungal species that cause stem rust in wheat, thus leading to huge losses in grain quantity and quality of the crop. The disease also causes various physiological affects on the crop such as water loss, reduced photosynthetic area and others.
<br>
Link to <i>Pgt</i> Ug99 dataset: <a href="http://ftp.ebi.ac.uk/ensemblgenomes/pub/release-51/fungi/fasta/puccinia_graminisug99/pep/" target="_blank" style="color:rgb(148, 15, 15);">Ensembl Fungi<sup> <i class="fas fa-external-link-alt"></i></sup></a>
<br>
Link to <i>Pgt</i> 21-0 dataset: <a href="https://www.ncbi.nlm.nih.gov/assembly/GCA_008522505.1" target="_blank" style="color:rgb(148, 15, 15);">NCBI<sup> <i class="fas fa-external-link-alt"></i></sup></a>
</p>
<hr style="height:2px;border-width:0;color:gray;background-color:gray"></hrstyle>
<!-- Image references -->
<h5 style="font-size: 18px;padding-bottom: 5px;"> Image reference</h5>
<p>
Image 1. <a href="https://twin-cities.umn.edu/news-events/origin-deadly-wheat-pathogen-revealed"> Origin of deadly wheat pathogen revealed <sup> <i class="fas fa-external-link-alt"></i></sup></a>
<br>
Image 2. <a href="https://www.ars.usda.gov/midwest-area/stpaul/cereal-disease-lab/docs/cereal-rusts/wheat-stem-rust/"> Wheat Stem Rust (USDA) <sup> <i class="fas fa-external-link-alt"></i></sup></a>
<br>
Image 3. <a href="https://commons.wikimedia.org/wiki/File:03_04_06_life_cycle_of_Puccinia_graminis_on_a_grass,_Pucciniales_Basidiomycota_(M._Piepenbring).png"> Life cycle of <i>Puccinia graminis</i> <sup> <i class="fas fa-external-link-alt"></i></sup></a>
</p>
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© 2022  |  <a href="https://www.usu.edu" target="_blank">Utah State University</a>  |  <a href="https://bioinfo.usu.edu" target="_blank">Kaundal Artificial Intelligence & Advanced Bioinformatics Laboratory</a>  |  <a href="https://www.psc.usu.edu" target="_blank">Department of Plants, Soils, and Climate</a>  |  <a href="https://www.biosystems.usu.edu" target="_blank">Center for Integrated BioSystems </a>
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<script type="text/javascript">
$("#proteinTOsearch").on('input', function() {
var proteinName = $(this).val();
if($.trim(proteinName)!=""){
$('#proteinSender').attr('href', "proteinSearchQuery.php?protein="+$.trim(proteinName)+"&species="+$('select#searchSelect').val());
}
});
$("#searchSelect").change(function() {
$('#proteinSender').attr('href', "proteinSearchQuery.php?protein="+$.trim($('input#proteinTOsearch').val())+"&species="+$(this).val());
});
</script>
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</html>