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Review annotations to GO:0046177 D-gluconate catabolic process #5582

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raymond91125 opened this issue Dec 13, 2024 · 1 comment
Open

Review annotations to GO:0046177 D-gluconate catabolic process #5582

raymond91125 opened this issue Dec 13, 2024 · 1 comment
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annotation review direct_ann_to_list_of_terms Direct annotations to list of GO terms

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@raymond91125
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raymond91125 commented Dec 13, 2024

Dear all,

The proposal has been made to obsolete GO:0046177 D-gluconate catabolic process
see geneontology/go-ontology#27106
This term represents a MF. Consider GO:0046316 gluconokinase activity [EC:2.7.1.12]

Experimental annotations that need to be reviewed are here:
https://docs.google.com/spreadsheets/d/1txGFvoagO-a_NGUoLTBoZm1dxEbsWwF9XA8Ew0hLjLA/edit?gid=0#gid=0

Impacted groups:
EcoCyc 4
PomBase 2

** Group contacts: https://github.com/geneontology/go-site/blob/master/metadata/group-contacts.csv

Mappings that need to be reviewed: (InterPro2GO, UniProt-Keywords, UniRule)
term file line
GO:0046177 metacyc2go MetaCyc:GLUCONSUPER-PWY > GO:D-gluconate catabolic process ; GO:0046177
GO:0046177 unirule2go UniRule:UR000683091 > GO:D-gluconate catabolic process ; GO:0046177
GO:0046177 hamap2go HAMAP:MF_02094 > GO:D-gluconate catabolic process ; GO:0046177

Thanks.

@ValWood
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ValWood commented Dec 20, 2024

PomBase done

@ValWood ValWood closed this as completed Dec 20, 2024
@ValWood ValWood reopened this Dec 20, 2024
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Labels
annotation review direct_ann_to_list_of_terms Direct annotations to list of GO terms
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