Review annotations to children and regulation of DNA-directed 5'-3' RNA polymerase activity GO:0003899

[raymond91125]

Dear all,

The proposal has been made to obsolete
GO:0001054 RNA polymerase I activity
GO:0001055 RNA polymerase II activity
GO:0001056 RNA polymerase III activity
GO:0001057 RNA polymerase IV activity
GO:0001058 RNA polymerase V activity
GO:0001064 single subunit type RNA polymerase activity
GO:0001065 mitochondrial single subunit type RNA polymerase activity
GO:0001066 plastid single subunit type RNA polymerase activity
GO:1903934 positive regulation of DNA primase activity
GO:1903932 regulation of DNA primase activity
GO:1903623 negative regulation of RNA polymerase III activity
GO:1903622 regulation of RNA polymerase III activity

Annotations to the polymerase terms may be moved to GO:0003899 DNA-directed 5'-3' RNA polymerase activity.
Regulation terms are MFs.

see geneontology/go-ontology#23779

Experimental annotations that need to be reviewed are here:
https://docs.google.com/spreadsheets/d/1bZPH53unSdt2dD-qAYLWeTppe40qfKkd6TXUWtzjiLo/edit?gid=0#gid=0

Impacted groups:
ComplexPortal 2
ParkinsonsUK-UCL 1 -done
PomBase 6 DONE
SGD 47
ZFIN 1 DONE
UniProt 3 DONE
WB 2 DONE
FlyBase 1 DONE
GeneDB 2

** Group contacts: https://github.com/geneontology/go-site/blob/master/metadata/group-contacts.csv

Mappings that need to be reviewed: (InterPro2GO, UniProt-Keywords, UniRule)
term file line
DONE GO:0001054 interpro2go InterPro:IPR033901 DNA-directed RNA polymerases I and III subunit AC40 > GO:RNA polymerase I activity ; GO:0001054
DONE GO:0001055 interpro2go InterPro:IPR037685 RNA polymerase RBP11 > GO:RNA polymerase II activity ; GO:0001055
DONE GO:0001055 reactome2go Reactome:R-HSA-6814549 > GO:RNA polymerase II activity ; GO:0001055
DONE GO:0001055 reactome2go Reactome:R-HSA-6814559 > GO:RNA polymerase II activity ; GO:0001055
DONE GO:0001056 interpro2go InterPro:IPR033901 DNA-directed RNA polymerases I and III subunit AC40 > GO:RNA polymerase III activity ; GO:0001056
DONE GO:0001056 reactome2go Reactome:R-HSA-1964482 > GO:RNA polymerase III activity ; GO:0001056

Thanks.

[vanaukenk]

WB done

[deustp01]

Reactome done previously.

[hattrill]

FB done

[doughowe]

ZFIN Done

[sarach06]

Hi,
Thank you very much for this. I have replace the terms with GO:0003899 in the InterPro entries mentioned above. These changes will be visible in InterPro release 104.0.
Just a reminder, please add the InterPro tag to tickets so we don't miss them with only assignees. Also, I will be on maternity leave from mid January, so if I'm the only one assigned, it will be missed.
Thank you!
Best regards,
Sara

[ValWood]

PomBase Done

[Antonialock]

uniprot done.

@raymond91125 in the future is it possible to separate the noctua uniprot annotations from the p2go ones?

[raymond91125]

@Antonialock hum, I'm not sure how to do that. This may be of general interest. Could you please bring this up in our next annotation meeting?Thanks.

[srengel]

SGD does not agree with the obsoletion of these specific RNA polymerase MF terms.