Create and integrate GOA species-centric files

[pgaudet]

Alex has create a test file containing all human annotations that GO Central want to load:

The set of protein accessions included in this file is based on UniProt reference proteomes, which provide one protein per gene.
!They include the protein sequences annotated in Swiss-Prot or the longest TrEMBL transcript if there is no Swiss-Prot record.
!In addition this file included Swiss-Prot Isoforms, RNA and ComplexPortal annotations data

We will generate these for pig, cow, dog and chicken, and load these rather than the 3 files we currently load (protein, RNA, complexes). This will also include isoform annotations, now in a separate file, not loaded by the GOC pipeline.

[pgaudet]

Number of entities:

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New GOA file

protein | 19698
lncRNA | 8476
rRNA | 5269
pre_miRNA | 3583
snoRNA | 1935
snRNA | 1851
tRNA | 1770
SRP_RNA | 1704
protein_complex | 1224
sRNA | 582
miRNA | 536
precursor_RNA | 270
ncRNA | 98
other | 71
misc_RNA | 23
scaRNA | 21
antisense_RNA | 16
RNase_MRP_RNA | 9
telomerase_RNA | 5
RNase_P_RNA | 4
ribozyme | 4
hammerhead_ribozyme | 2
guide_RNA | 1
piRNA | 1

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AmiGO
protein	19647
gene_product	13026
rRNA	5269
snoRNA	1935
snRNA	1851
tRNA	1770
SRP_RNA	1704
miRNA	536
protein_complex	506
ncRNA	98
antisense_RNA	16
RNase_MRP_RNA	9
telomerase_RNA	5
RNase_P_RNA	4
ribozyme	4
hammerhead_ribozyme	2
guide_RNA	1
piRNA	1

[pgaudet]

No description provided.