From dc7c4d2062ddfdb609f5dd9adf3c54ee3e733e02 Mon Sep 17 00:00:00 2001 From: kltm Date: Thu, 26 Sep 2024 13:25:05 -0700 Subject: [PATCH] Update gorule-0000027.md Found additional implementation points while looking at https://github.com/pombase/pombase-chado/issues/1224 ; updating. Tagging @mugitty @pgaudet --- metadata/rules/gorule-0000027.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/metadata/rules/gorule-0000027.md b/metadata/rules/gorule-0000027.md index eaf1d002..54015e10 100644 --- a/metadata/rules/gorule-0000027.md +++ b/metadata/rules/gorule-0000027.md @@ -8,7 +8,7 @@ status: implemented contact: "go-quality@lists.stanford.edu" implementations: - language: python - source: https://github.com/biolink/ontobio/blob/master/ontobio/io/gafparser.py + source: https://github.com/biolink/ontobio/blob/master/ontobio/io/gafparser.py https://github.com/biolink/ontobio/blob/master/ontobio/io/assocparser.py --- - DB (GAF and GPAD column 1); and all DB abbreviations in 'with' field (GAF column 8; GPAD column 7) and in the annotation extensions (GAF column 16; GPAD column 11) must be in [db-xrefs.yaml](https://github.com/geneontology/go-site/blob/master/metadata/db-xrefs.yaml) (see below) - id_syntax information in the [db-xrefs.yaml](https://github.com/geneontology/go-site/blob/master/metadata/db-xrefs.yaml) file can be used to validate local identifiers.