diff --git a/docs/gorules_test_errors.gaf b/docs/gorules_test_errors.gaf index 918bc5f6..98f2aa9b 100644 --- a/docs/gorules_test_errors.gaf +++ b/docs/gorules_test_errors.gaf @@ -167,10 +167,16 @@ WormBase WBGene0000002 aat-1 part_of GO:1990184 WB_REF:WBPaper00006408|PMID:1466 WormBase WBGene00000002|WBGene00000003 aat-1 part_of GO:1990184 WB_REF:WBPaper00006408|PMID:14668347 IPI WB:WBGene00000225 C GORULE_TEST:0000027-8 F27C8.1 gene taxon:6239 20131022 GO_Central ! SHOULD PASS GORULE:0000027 - TEST 9 - 2 values in with field, pipe-separated UniProtKB Q6UW15 REG3G involved_in GO:0006401 PMID:16931762 IGI UniProtKB:P77335|UniProtKB:A0A0K3AV08 P GORULE_TEST:0000027-9 Regenerating islet-derived protein 3-gamma REG3G|PAP1B|UNQ429/PRO162 protein taxon:9606 20220606 GO_Central -! FAILS GORULE:0000027 - TEST 10 - 2 values in with field, comma-separated +! FAILS GORULE:0000027 - TEST 10 - 2 values in 'with' field, comma-separated UniProtKB Q6UW15 REG3G involved_in GO:0006401 PMID:16931762 IGI UniProtKB:P77335,UniProtKB:A0A0K3AV08 P GORULE_TEST:0000027-10 Regenerating islet-derived protein 3-gamma REG3G|PAP1B|UNQ429/PRO162 protein taxon:9606 20220606 GO_Central -! FAILS GORULE:0000027 - TEST 11 - 2 values in with field, second namespace missing +! FAILS GORULE:0000027 - TEST 11 - 2 values in 'with' field, second namespace missing UniProtKB Q6UW15 REG3G involved_in GO:0006401 PMID:16931762 IGI UniProtKB:P77335|A0A0K3AV08 P GORULE_TEST:0000027-11 Regenerating islet-derived protein 3-gamma REG3G|PAP1B|UNQ429/PRO162 protein taxon:9606 20220606 GO_Central +! FAILS GORULE:0000027 - TEST 12 - 'with' prefix not in /db-xrefs.yaml +UniProtKB Q6UW15 REG3G involved_in GO:0006401 PMID:16931762 IGI UniPotKB:P77335 P GORULE_TEST:0000027-12 Regenerating islet-derived protein 3-gamma REG3G|PAP1B|UNQ429/PRO162 protein taxon:9606 20220606 GO_Central +! FAILS GORULE:0000027 - TEST 13 - 'with' Prefix is a synonyms in /db-xrefs.yaml and IS REPAIRED +FB FBgn0020238 14-3-3epsilon involved_in GO:0006401 PMID:16931762 IGI FLYBASE:FBgn0004907 P GORULE_TEST:0000027-13 14-3-3epsilon 14-3-3|14-3-3 epsilon|14-3-3 protein epsilon protein taxon:7227 20220606 GO_Central +! FAILS GORULE:0000027 - TEST 14 - 'bad with' id syntax - should have 7 digits, has 8 +FB FBgn0020238 14-3-3epsilon involved_in GO:0006401 PMID:16931762 IGI FLYBASE:FBgn10004907 P GORULE_TEST:0000027-13 14-3-3epsilon 14-3-3|14-3-3 epsilon|14-3-3 protein epsilon protein taxon:7227 20220606 GO_Central ! FAILS GORULE:0000028 - TEST 1 - Bad GO aspect, C instead of P UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 PMID:23072806 IDA C GORULE_TEST:0000028-1 Calpain-10 CAPN10,KIAA1845 protein taxon:9606 20140213 GO_Central ! FAILS GORULE:0000028 - TEST 2 - Bad GO aspect, F instead of P