Need decisions on non-implemented rules

[pgaudet]

The following rules are not implemented; probably we don't want to implement them at this stage, but I'd like to review this on a mangers call.

• gorule-0000004 Reciprocal annotations for 'protein binding ; GO:0005515
• gorule-0000009 Annotation Intersection Alerts
• gorule-0000023 Materialize annotations for inter-branch links in the GO
• gorule-0000024 Prevent propagation of certain terms by orthology
• gorule-0000025 Creating more specific annotations by reasoning over extensions
• gorule-0000036 Report annotations that involve gene products where the gene product is annotated to a term 'x' and 'regulation of X' (multiple annotations involved)
• gorule-0000038 Annotations using ISS/ISA/ISO evidence should refer to a gene product (in the 'with' column) where there exists
• gorule-0000043 Check for valid combination of evidence code and GO_REF
• gorule-0000045 With/from: Verify that the combination of evidence (ECO) codes conform to the rules in eco-usage-constraints.yaml
• gorule-0000047 With/from: ChEBI IDs in With/from can only be used with terms that are descendants of GO:0005488 (binding)
• gorule-0000049 If the annotation has 'contributes_to' as its qualifier, verify that at least one annotation to GO:0043234 (protein complex), or one of its child terms exists
• gorule-0000051 Warning Binding require a value in the Annotation Extension field
• gorule-0000053 NOT' annotation should not have extension
• gorule-0000054 Genes annotated with ND should have no other annotations for that aspect
• gorule-0000056 Annotations should validate against GO shape expressions
• gorule-0000058 Filter Object extensions should conform to the extensions-patterns.yaml file in metadata

@mugitty @kltm @vanaukenk