From 8d04c32573445f34c345c8058b985159f3604f96 Mon Sep 17 00:00:00 2001 From: pgaudet Date: Mon, 27 Nov 2023 17:59:58 +0100 Subject: [PATCH 1/2] Create gorule-0000012.md --- metadata/rules/gorule-0000012.md | 14 ++++++++++++++ 1 file changed, 14 insertions(+) create mode 100644 metadata/rules/gorule-0000012.md diff --git a/metadata/rules/gorule-0000012.md b/metadata/rules/gorule-0000012.md new file mode 100644 index 00000000..13f51195 --- /dev/null +++ b/metadata/rules/gorule-0000012.md @@ -0,0 +1,14 @@ +--- +layout: rule +id: GORULE:0000012 +title: "IC needs with GO" +type: filter +fail_mode: hard +status: approved +contact: "go-quality@lists.stanford.edu" +implementations: +--- + + +TO COMPLETE +For With/from column, If Evidence code = IC, then it has to be GO id. Else it has to be one of the databases . Some evidence codes do not have a with/From entry. Rule 17. From 7cdfecff9bb4d601b82b97b1c310338f01b93202 Mon Sep 17 00:00:00 2001 From: pgaudet Date: Mon, 27 Nov 2023 17:00:19 +0000 Subject: [PATCH 2/2] refreshing goref and rules README.md files --- metadata/rules/README.md | 14 ++++++++++++++ 1 file changed, 14 insertions(+) diff --git a/metadata/rules/README.md b/metadata/rules/README.md index 16c4a885..d09dbd68 100644 --- a/metadata/rules/README.md +++ b/metadata/rules/README.md @@ -19,6 +19,7 @@ For more details for GOC members on how to create rules, see [SOP.md](SOP.md) * GORULE:0000009 Annotation Intersection Alerts * GORULE:0000010 DEPRECATED - PubMed reference formatting must be correct * GORULE:0000011 ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND + * GORULE:0000012 IC needs with GO * GORULE:0000013 Taxon-appropriate annotation check * GORULE:0000014 DEPRECATED. GO terms in annotations should not be obsolete. * GORULE:0000015 Dual species taxon check @@ -335,6 +336,19 @@ The root nodes: GO:0008150 biological_process, GO:0003674 molecular_function and Error report (number of errors) in [db_species]-report.html & owltools-check.txt (details). + + +## IC needs with GO + + * id: [GORULE:0000012](https://github.com/geneontology/go-site/blob/master/metadata/rules/gorule-0000012.md) + * status: approved + + + + +TO COMPLETE +For With/from column, If Evidence code = IC, then it has to be GO id. Else it has to be one of the databases . Some evidence codes do not have a with/From entry. Rule 17. + ## Taxon-appropriate annotation check