The provided VCF file is malformed. Error during index creation: Input file is not in valid block compressed format., for input source: /home/runner/work/imputationserver-utils/imputationserver-utils/test-data/data/unorderd/minimac_test.50.vcf.gz

Your upload data contains chromosome 'chr20'. This is not a valid hg19 encoding. Please ensure that your input data is build hg19 and chromosome is encoded as '20'.

The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-java@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

Skip allele frequency check.

Uploaded data is hg38 and reference is hg19.