ci-tests.yml

name: CI Tests

on: [push, pull_request]

jobs:

  test:

    runs-on: ubuntu-latest
    strategy:
      matrix:
        shard: [1, 2, 3, 4, 5]

    steps:
      - name: Checkout
        uses: actions/checkout@v2

      - name: Set up JDK 11
        uses: actions/setup-java@v2
        with:
          java-version: '11'
          distribution: 'adopt'

      - name: Setup Nextflow ${{ matrix.nextflow }}
        uses: nf-core/setup-nextflow@v1
        with:
          version: "latest-edge"

      - name: Install nf-test
        run: |
          wget -qO- https://code.askimed.com/install/nf-test | bash  -s 0.9.0-rc2
          sudo mv nf-test /usr/local/bin/

      - name: Set up Docker Buildx
        uses: docker/setup-buildx-action@v3

      - name: Build Docker
        uses: docker/build-push-action@v5
        with:
          context: .
          push: false
          load: true
          tags: "genepi/nf-gwas"
          cache-from: type=gha          
          cache-to: type=gha,mode=max

      - name: Run Tests (Shard ${{ matrix.shard }}/${{ strategy.job-total }})
        run: nf-test test --ci --shard ${{ matrix.shard }}/${{ strategy.job-total }}
        
      - name: Run static tests with development profile
        run:  ./run-tests.sh