From 5c55c7bd2ccc072d9fe538789de83d72fb536dd5 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?=F0=9F=94=A7=20Ino=20de=20Bruijn=20=F0=9F=A7=AC?=
 <ino@ino.bio>
Date: Tue, 5 May 2020 10:29:05 -0400
Subject: [PATCH] fix vcf conversion

---
 src/index.ts | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/src/index.ts b/src/index.ts
index 5f77c24..2931055 100755
--- a/src/index.ts
+++ b/src/index.ts
@@ -25,8 +25,8 @@ program
 program
     .command('convert')
     .description('convert between different mutation formats (e.g. VCF to MAF)')
-    .action((inputFile, args) => {
-        convertVCFtoMAF(inputFile);
+    .action((input, args) => {
+        convertVCFtoMAF(args[0]);
     });
 
 program.command('annotate', 'retrieve annotations');