diff --git a/.bumpversion.cfg b/.bumpversion.cfg
index 32029bf..731e6b3 100644
--- a/.bumpversion.cfg
+++ b/.bumpversion.cfg
@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 4.3.4
+current_version = 4.3.5
 commit = False
 tag = False
 
diff --git a/.github/workflows/changes.yml b/.github/workflows/changes.yml
index 0270868..09c229b 100644
--- a/.github/workflows/changes.yml
+++ b/.github/workflows/changes.yml
@@ -7,7 +7,7 @@ env:
   DEFAULT_PLATFORM: '["linux"]'
   MATRIX_PLATFORM: '["linux", "macos"]'
   BASE_TAG: "genomehubs/blobtoolkit"
-  VERSION: 4.3.4
+  VERSION: 4.3.5
 
 on:
   workflow_call:
diff --git a/.pipelinebumpversion.cfg b/.pipelinebumpversion.cfg
index 2bf5565..695d83e 100644
--- a/.pipelinebumpversion.cfg
+++ b/.pipelinebumpversion.cfg
@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 4.3.4
+current_version = 4.3.5
 commit = False
 tag = False
 
diff --git a/.prebumpversion.cfg b/.prebumpversion.cfg
index 199ff83..0535676 100644
--- a/.prebumpversion.cfg
+++ b/.prebumpversion.cfg
@@ -1,4 +1,4 @@
 [bumpversion]
-current_version = 4.3.4
+current_version = 4.3.5
 commit = False
 tag = False
diff --git a/README.md b/README.md
index 450b1d5..50fb54d 100644
--- a/README.md
+++ b/README.md
@@ -1,4 +1,4 @@
-# BlobToolKit (v4.3.4)
+# BlobToolKit (v4.3.5)
 
 [![MIT License](https://img.shields.io/badge/license-MIT-blue.svg)](https://opensource.org/licenses/MIT)
 [![DOI](https://zenodo.org/badge/150091036.svg)](https://zenodo.org/badge/latestdoi/150091036)
diff --git a/setup.py b/setup.py
index 82b3a66..49a0fe1 100644
--- a/setup.py
+++ b/setup.py
@@ -24,7 +24,7 @@ def read(*names, **kwargs):
 
 setup(
     name="blobtoolkit",  # Required
-    version="4.3.4",
+    version="4.3.5",
     description="blobtoolkit",  # Optional
     long_description="blobtoolkit",  # Optional
     long_description_content_type="text/markdown",
@@ -139,9 +139,9 @@ def read(*names, **kwargs):
             "pytest-mock>=3.1.1",
             "pytest>=6.0.0",
         ],
-        "full": ["blobtoolkit-host==4.3.0", "blobtoolkit-pipeline==4.3.4"],
+        "full": ["blobtoolkit-host==4.3.0", "blobtoolkit-pipeline==4.3.5"],
         "host": ["blobtoolkit-host==4.3.0"],
-        "pipeline": ["blobtoolkit-pipeline==4.3.4"],
+        "pipeline": ["blobtoolkit-pipeline==4.3.5"],
     },
     entry_points={
         "console_scripts": [
diff --git a/src/blobtoolkit-pipeline/setup.py b/src/blobtoolkit-pipeline/setup.py
index 62ba80d..a93938c 100644
--- a/src/blobtoolkit-pipeline/setup.py
+++ b/src/blobtoolkit-pipeline/setup.py
@@ -24,7 +24,7 @@ def read(*names, **kwargs):
 
 setup(
     name="blobtoolkit-pipeline",  # Required
-    version="4.3.4",
+    version="4.3.5",
     description="blobtoolkit-pipeline",  # Optional
     long_description="blobtoolkit-pipeline",  # Optional
     long_description_content_type="text/markdown",
diff --git a/src/blobtoolkit-pipeline/src/README.md b/src/blobtoolkit-pipeline/src/README.md
index c122a2f..e413c38 100644
--- a/src/blobtoolkit-pipeline/src/README.md
+++ b/src/blobtoolkit-pipeline/src/README.md
@@ -1,4 +1,4 @@
-# BTK Pipeline vversion="4.3.4"
+# BTK Pipeline vversion="4.3.5"
 
 Splits original pipeline into sub-pipelines that can be run independently or using the `blobtoolkit.smk` meta pipeline.
 
diff --git a/src/blobtoolkit-pipeline/src/lib/version.py b/src/blobtoolkit-pipeline/src/lib/version.py
index 6e9a4eb..b2bdc18 100644
--- a/src/blobtoolkit-pipeline/src/lib/version.py
+++ b/src/blobtoolkit-pipeline/src/lib/version.py
@@ -1,4 +1,4 @@
 #!/usr/bin/env python3
 """blobtoolkit version."""
 
-__version__ = "blobtoolkit-pipeline v4.3.4"
+__version__ = "blobtoolkit-pipeline v4.3.5"
diff --git a/src/blobtools/lib/version.py b/src/blobtools/lib/version.py
index 653f513..1e0cafa 100644
--- a/src/blobtools/lib/version.py
+++ b/src/blobtools/lib/version.py
@@ -1,4 +1,4 @@
 #!/usr/bin/env python3
 """blobtoolkit version."""
 
-__version__ = "blobtoolkit v4.3.4"
+__version__ = "blobtoolkit v4.3.5"
diff --git a/src/btk/lib/version.py b/src/btk/lib/version.py
index 653f513..1e0cafa 100644
--- a/src/btk/lib/version.py
+++ b/src/btk/lib/version.py
@@ -1,4 +1,4 @@
 #!/usr/bin/env python3
 """blobtoolkit version."""
 
-__version__ = "blobtoolkit v4.3.4"
+__version__ = "blobtoolkit v4.3.5"
diff --git a/src/docker/blobtools/env.yaml b/src/docker/blobtools/env.yaml
index 7184b1e..1bc061e 100644
--- a/src/docker/blobtools/env.yaml
+++ b/src/docker/blobtools/env.yaml
@@ -8,4 +8,4 @@ dependencies:
   - python==3.9.13
   - seqtk==1.3
   - pip:
-      - blobtoolkit[full]==blobtoolkit==4.3.4
+      - blobtoolkit[full]==blobtoolkit==4.3.5
diff --git a/src/docker/env.yaml b/src/docker/env.yaml
index 9f4194b..e6347e0 100644
--- a/src/docker/env.yaml
+++ b/src/docker/env.yaml
@@ -16,4 +16,4 @@ dependencies:
   - samtools==1.15.1
   - seqtk==1.3
   - pip:
-      - blobtoolkit[full]==4.3.4
+      - blobtoolkit[full]==4.3.5