diff --git a/.bumpversion.cfg b/.bumpversion.cfg
index e423633e..60508160 100644
--- a/.bumpversion.cfg
+++ b/.bumpversion.cfg
@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 3.3.9
+current_version = 3.3.10
 commit = True
 tag = True
 tag_name = {new_version}
diff --git a/.github/workflows/package-blobtoolkit.yml b/.github/workflows/package-blobtoolkit.yml
index 0de86776..a649bbc8 100644
--- a/.github/workflows/package-blobtoolkit.yml
+++ b/.github/workflows/package-blobtoolkit.yml
@@ -1,6 +1,6 @@
 name: release-blobtoolkit
 env:
-  VERSION: 3.3.9
+  VERSION: 3.3.10
 
 on:
   push:
diff --git a/README.md b/README.md
index 7c184b68..74619eae 100644
--- a/README.md
+++ b/README.md
@@ -1,4 +1,4 @@
-# BlobToolKit (v3.3.9)
+# BlobToolKit (v3.3.10)
 
 [![MIT License](https://img.shields.io/badge/license-MIT-blue.svg)](https://opensource.org/licenses/MIT)
 [![DOI](https://zenodo.org/badge/150091036.svg)](https://zenodo.org/badge/latestdoi/150091036)
diff --git a/setup.py b/setup.py
index 14d791d3..1b20bba3 100644
--- a/setup.py
+++ b/setup.py
@@ -97,7 +97,7 @@ def read(*names, **kwargs):
 
 setup(
     name="blobtoolkit",  # Required
-    version="3.3.9",
+    version="3.3.10",
     description="blobtoolkit",  # Optional
     long_description="blobtoolkit",  # Optional
     long_description_content_type="text/markdown",
diff --git a/src/blobtools/lib/version.py b/src/blobtools/lib/version.py
index e546cce4..2f8e401d 100644
--- a/src/blobtools/lib/version.py
+++ b/src/blobtools/lib/version.py
@@ -1,4 +1,4 @@
 #!/usr/bin/env python3
 """blobtoolkit version."""
 
-__version__ = "blobtoolkit v3.3.9"
+__version__ = "blobtoolkit v3.3.10"
diff --git a/src/btk/lib/version.py b/src/btk/lib/version.py
index e546cce4..2f8e401d 100644
--- a/src/btk/lib/version.py
+++ b/src/btk/lib/version.py
@@ -1,4 +1,4 @@
 #!/usr/bin/env python3
 """blobtoolkit version."""
 
-__version__ = "blobtoolkit v3.3.9"
+__version__ = "blobtoolkit v3.3.10"
diff --git a/src/docker/Dockerfile b/src/docker/Dockerfile
index d00554ad..040b765a 100644
--- a/src/docker/Dockerfile
+++ b/src/docker/Dockerfile
@@ -1,7 +1,7 @@
 FROM ubuntu:20.04
 LABEL maintainer="blobtoolkit@genomehubs.org"
 LABEL license="MIT"
-ARG VERSION=3.3.9
+ARG VERSION=3.3.10
 LABEL version=$VERSION
 ENV CONTAINER_VERSION=$VERSION
 
diff --git a/src/docker/api/Dockerfile b/src/docker/api/Dockerfile
index 16aa1ee7..5e6b62e8 100644
--- a/src/docker/api/Dockerfile
+++ b/src/docker/api/Dockerfile
@@ -1,7 +1,7 @@
 FROM alpine:3.15
 LABEL maintainer="blobtoolkit@genomehubs.org"
 LABEL license="MIT"
-ARG VERSION=3.3.9
+ARG VERSION=3.3.10
 LABEL version=$VERSION
 
 ENV CONTAINER_VERSION=$VERSION
diff --git a/src/docker/blobtools/Dockerfile b/src/docker/blobtools/Dockerfile
index 6211ff10..d92716ce 100644
--- a/src/docker/blobtools/Dockerfile
+++ b/src/docker/blobtools/Dockerfile
@@ -1,7 +1,7 @@
 FROM ubuntu:20.04
 LABEL maintainer="blobtoolkit@genomehubs.org"
 LABEL license="MIT"
-ARG VERSION=3.3.9
+ARG VERSION=3.3.10
 LABEL version=$VERSION
 ENV CONTAINER_VERSION=$VERSION
 
diff --git a/src/docker/blobtools/env.yaml b/src/docker/blobtools/env.yaml
index e67dc5f7..a6fd6f0f 100644
--- a/src/docker/blobtools/env.yaml
+++ b/src/docker/blobtools/env.yaml
@@ -9,4 +9,4 @@ dependencies:
   - python==3.9.13
   - seqtk==1.3
   - pip:
-      - blobtoolkit==3.3.9
+      - blobtoolkit==3.3.10
diff --git a/src/docker/env.yaml b/src/docker/env.yaml
index e0e29856..71b0477b 100644
--- a/src/docker/env.yaml
+++ b/src/docker/env.yaml
@@ -16,4 +16,4 @@ dependencies:
   - samtools==1.15.1
   - seqtk==1.3
   - pip:
-      - blobtoolkit==3.3.9
+      - blobtoolkit==3.3.10
diff --git a/src/docker/viewer/Dockerfile b/src/docker/viewer/Dockerfile
index 545b3586..3422270e 100644
--- a/src/docker/viewer/Dockerfile
+++ b/src/docker/viewer/Dockerfile
@@ -1,7 +1,7 @@
 FROM alpine:3.15
 LABEL maintainer="blobtoolkit@genomehubs.org"
 LABEL license="MIT"
-ARG VERSION=3.3.9
+ARG VERSION=3.3.10
 LABEL version=$VERSION
 
 ENV CONTAINER_VERSION=$VERSION
diff --git a/src/pipeline/lib/version.py b/src/pipeline/lib/version.py
index e546cce4..2f8e401d 100644
--- a/src/pipeline/lib/version.py
+++ b/src/pipeline/lib/version.py
@@ -1,4 +1,4 @@
 #!/usr/bin/env python3
 """blobtoolkit version."""
 
-__version__ = "blobtoolkit v3.3.9"
+__version__ = "blobtoolkit v3.3.10"
diff --git a/src/viewer/README.md b/src/viewer/README.md
index 5aa8656f..d1826268 100644
--- a/src/viewer/README.md
+++ b/src/viewer/README.md
@@ -1,4 +1,4 @@
-# BlobToolKit Viewer (v3.3.9)
+# BlobToolKit Viewer (v3.3.10)
 
 [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.1134794.svg)](https://doi.org/10.5281/zenodo.1134794)