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MultiQC reruns on -resume #200

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Jakob37 opened this issue Feb 18, 2025 · 1 comment
Open

MultiQC reruns on -resume #200

Jakob37 opened this issue Feb 18, 2025 · 1 comment
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@Jakob37
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Jakob37 commented Feb 18, 2025

Description of the bug

Overall the Tomte pipeline resumes successfully from cache when rerun.

The MultiQC step though is persistently reexecuted on each resume.

It might related to how the input channel, i.e. ch_multiqc_files is constructed, i.e. that the ordering of the input could change from run to run (is my guess).

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@Jakob37 Jakob37 added the bug Something isn't working label Feb 18, 2025
@jemten
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jemten commented Feb 19, 2025

Hmm, we could look into sorting the inout channel prior to presenting to multiqc. Shouldn't make a difference to multiqc and ensure the order of inputs.

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