Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

[v0.5.1] - 2024-11-21

Added

__version__ attribute on the top-level package object

Changed

Parameter signal_column in compute_pixel_statistics is now channel_column.

[v0.5.0] - 2024-11-21

Added

ImagingChannel wrapper type
Cross-chanel signal extraction/analysis tool for images; see Issue 27.

Changed

Depend on v2.2.1 of numpydoc_decorator directly from PyPI, rather than our custom release from earlier.
Support Python 3.12

[v0.4.4] - 2024-04-19

Fixed

Fix the return type in signature of find_multiple_paths_by_fov.

[v0.4.3] - 2024-04-19

Added

Add type checking/hinting information to the package distribution.

[v0.4.2] - 2024-04-18

Changed

Using more updated version of numpydoc_decorator for our lab, tagged rather than just commit hashed

[v0.4.1] - 2024-04-17

Changed

Bumped up lower bound on numpydoc_generator dependency, for compatibility with downstream projects which use a feature not yet in a release version.

[v0.4.0] - 2024-04-17

Added

Types and functions related to geometry
Types and functions related to paths (pathtools)
ZARR tools (zarr_tools)
Some generally useful data types for genome biology (types)

Changed

Adopted ruff for formatting (rather than black) and for linting (rather than pylint).

Removed

All custom error types were removed; namely, absence of TensorFlow now will give ModuleNotFoundError (built-in) rather than a narrower error type.

[v0.3.0] - 2024-03-13

Made it so that PathWrapperException is always what arises when construction of a value of a refined path type fails, rather than having direct construction with a Path giving a TypeError as it was previously.

[v0.2.0] - 2023-08-01

Changed

Exposed names, mainly from pathtools and exceptions, at the package level, for more stable use in dependent projects.

[v0.1.0] - 2023-07-14

Added

This package, first release