diff --git a/GF.jsonld b/GF.jsonld index 0994f55..efaaba3 100644 --- a/GF.jsonld +++ b/GF.jsonld @@ -1,64870 +1,35179 @@ { - "@context": { - "bts": "http://schema.biothings.io/", - "rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#", - "rdfs": "http://www.w3.org/2000/01/rdf-schema#", - "schema": "http://schema.org/", - "xsd": "http://www.w3.org/2001/XMLSchema#" - }, - "@graph": [ - { - "@id": "schema:Text", - "@type": [ - "schema:DataType", - "rdfs:Class" - ], - "rdfs:comment": "Data type: Text.", - "rdfs:label": "Text" - }, - { - "@id": "schema:Number", - "@type": [ - "schema:DataType", - "rdfs:Class" - ], - "rdfs:comment": "Data type: Number.", - "rdfs:label": "Number" - }, - { - "@id": "schema:Integer", - "@type": "rdfs:Class", - "rdfs:comment": "Data type: Integer.", - "rdfs:label": "Integer", - "rdfs:subClassOf": { - "@id": "schema:Number" - } - }, - { - "@id": "schema:Thing", - "@type": "rdfs:Class", - "rdfs:comment": "Thing", - "rdfs:label": "Thing", - "schema:isPartOf": { - "@id": "http://schema.org" - } - }, - { - "@id": "bts:BiologicalEntity", - "@type": "rdfs:Class", - "rdfs:comment": null, - "rdfs:label": "BiologicalEntity", - "rdfs:subClassOf": { - "@id": "schema:Thing" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:OntologyClass", - "@type": "rdfs:Class", - "rdfs:comment": "a concept or class in an ontology, vocabulary or thesaurus", - "rdfs:label": "OntologyClass", - "rdfs:subClassOf": { - "@id": "schema:Thing" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:RelationshipType", - "@type": "rdfs:Class", - "rdfs:comment": "The subgroup that describes the state of connectedness between members of the unit of society organized around kinship ties.", - "rdfs:label": "RelationshipType", - "rdfs:subClassOf": [ - { - "@id": "bts:FamilyHistory" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:AdoptedDaughter" - }, - { - "@id": "bts:AdoptedSon" - }, - { - "@id": "bts:AdoptiveBrother" - }, - { - "@id": "bts:AdoptiveFather" - }, - { - "@id": "bts:AdoptiveMother" - }, - { - "@id": "bts:AdoptiveSister" - }, - { - "@id": "bts:Aunt" - }, - { - "@id": "bts:Brother" - }, - { - "@id": "bts:Brother-in-law" - }, - { - "@id": "bts:Child" - }, - { - "@id": "bts:Cousin" - }, - { - "@id": "bts:Daughter" - }, - { - "@id": "bts:Daughter-in-law" - }, - { - "@id": "bts:DomesticPartner" - }, - { - "@id": "bts:Father" - }, - { - "@id": "bts:Father-in-law" - }, - { - "@id": "bts:FemaleCousin" - }, - { - "@id": "bts:FirstCousin" - }, - { - "@id": "bts:FirstCousinOnceRemoved" - }, - { - "@id": "bts:FosterBrother" - }, - { - "@id": "bts:FosterDaughter" - }, - { - "@id": "bts:FosterFather" - }, - { - "@id": "bts:FosterMother" - }, - { - "@id": "bts:FosterSister" - }, - { - "@id": "bts:FosterSon" - }, - { - "@id": "bts:FraternalTwinBrother" - }, - { - "@id": "bts:FraternalTwinSibling" - }, - { - "@id": "bts:FraternalTwinSister" - }, - { - "@id": "bts:FullBrother" - }, - { - "@id": "bts:FullSister" - }, - { - "@id": "bts:GrandNephew" - }, - { - "@id": "bts:GrandNiece" - }, - { - "@id": "bts:Grandchild" - }, - { - "@id": "bts:Granddaughter" - }, - { - "@id": "bts:Grandfather" - }, - { - "@id": "bts:Grandmother" - }, - { - "@id": "bts:Grandparent" - }, - { - "@id": "bts:Grandson" - }, - { - "@id": "bts:GreatGrandchild" - }, - { - "@id": "bts:HalfBrother" - }, - { - "@id": "bts:HalfSibling" - }, - { - "@id": "bts:HalfSister" - }, - { - "@id": "bts:Husband" - }, - { - "@id": "bts:IdenticalTwinBrother" - }, - { - "@id": "bts:IdenticalTwinSibling" - }, - { - "@id": "bts:IdenticalTwinSister" - }, - { - "@id": "bts:LegalGuardian" - }, - { - "@id": "bts:MaleCousin" - }, - { - "@id": "bts:MaternalAunt" - }, - { - "@id": "bts:MaternalFirstCousin" - }, - { - "@id": "bts:MaternalFirstCousinOnceRemoved" - }, - { - "@id": "bts:MaternalGrandfather" - }, - { - "@id": "bts:MaternalGrandmother" - }, - { - "@id": "bts:MaternalGrandparent" - }, - { - "@id": "bts:MaternalGreatAunt" - }, - { - "@id": "bts:MaternalGreatGrandparent" - }, - { - "@id": "bts:MaternalGreatUncle" - }, - { - "@id": "bts:MaternalHalfBrother" - }, - { - "@id": "bts:MaternalHalfSibling" - }, - { - "@id": "bts:MaternalHalfSister" - }, - { - "@id": "bts:MaternalUncle" - }, - { - "@id": "bts:Mother" - }, - { - "@id": "bts:Mother-in-law" - }, - { - "@id": "bts:NaturalBrother" - }, - { - "@id": "bts:NaturalChild" - }, - { - "@id": "bts:NaturalDaughter" - }, - { - "@id": "bts:NaturalFather" - }, - { - "@id": "bts:NaturalGrandchild" - }, - { - "@id": "bts:NaturalGrandfather" - }, - { - "@id": "bts:NaturalGrandmother" - }, - { - "@id": "bts:NaturalGrandparent" - }, - { - "@id": "bts:NaturalMother" - }, - { - "@id": "bts:NaturalParent" - }, - { - "@id": "bts:NaturalSibling" - }, - { - "@id": "bts:NaturalSister" - }, - { - "@id": "bts:NaturalSon" - }, - { - "@id": "bts:Nephew" - }, - { - "@id": "bts:Niece" - }, - { - "@id": "bts:NieceSecondDegreeRelative" - }, - { - "@id": "bts:Other" - }, - { - "@id": "bts:Parent" - }, - { - "@id": "bts:PaternalAunt" - }, - { - "@id": "bts:PaternalFirstCousin" - }, - { - "@id": "bts:PaternalFirstCousinOnceRemoved" - }, - { - "@id": "bts:PaternalGrandfather" - }, - { - "@id": "bts:PaternalGrandmother" - }, - { - "@id": "bts:PaternalGrandparent" - }, - { - "@id": "bts:PaternalGreatAunt" - }, - { - "@id": "bts:PaternalGreatGrandparent" - }, - { - "@id": "bts:PaternalGreatUncle" - }, - { - "@id": "bts:PaternalHalfBrother" - }, - { - "@id": "bts:PaternalHalfSibling" - }, - { - "@id": "bts:PaternalHalfSister" - }, - { - "@id": "bts:PaternalUncle" - }, - { - "@id": "bts:Refused" - }, - { - "@id": "bts:Sibling" - }, - { - "@id": "bts:Sister" - }, - { - "@id": "bts:Sister-in-law" - }, - { - "@id": "bts:Son" - }, - { - "@id": "bts:Son-in-law" - }, - { - "@id": "bts:Spouse" - }, - { - "@id": "bts:StepChild" - }, - { - "@id": "bts:StepSibling" - }, - { - "@id": "bts:Stepbrother" - }, - { - "@id": "bts:Stepdaughter" - }, - { - "@id": "bts:Stepfather" - }, - { - "@id": "bts:Stepmother" - }, - { - "@id": "bts:Stepsister" - }, - { - "@id": "bts:Stepson" - }, - { - "@id": "bts:TwinSibling" - }, - { - "@id": "bts:Uncle" - }, - { - "@id": "bts:Unrelated" - }, - { - "@id": "bts:Ward" - }, - { - "@id": "bts:Wife" - }, - { - "@id": "bts:Unknown" - }, - { - "@id": "bts:NotReported" - } - ], - "sms:displayName": "Relationship Type", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:GeneOntologyClass", - "@type": "rdfs:Class", - "rdfs:comment": "an ontology class that describes a functional aspect of a gene, gene prodoct or complex", - "rdfs:label": "GeneOntologyClass", - "rdfs:subClassOf": { - "@id": "bts:OntologyClass" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:OrganismTaxon", - "@type": "rdfs:Class", - "rdfs:comment": null, - "rdfs:label": "OrganismTaxon", - "rdfs:subClassOf": { - "@id": "bts:OntologyClass" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:OrganismalEntity", - "@type": "rdfs:Class", - "rdfs:comment": "A named entity that is either a part of an organism, a whole organism, population or clade of organisms, excluding molecular entities", - "rdfs:label": "OrganismalEntity", - "rdfs:subClassOf": { - "@id": "bts:BiologicalEntity" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:IndividualOrganism", - "@type": "rdfs:Class", - "rdfs:comment": null, - "rdfs:label": "IndividualOrganism", - "rdfs:subClassOf": { - "@id": "bts:OrganismalEntity" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:Case", - "@type": "rdfs:Class", - "rdfs:comment": "An individual organism that has a patient role in some clinical context.", - "rdfs:label": "Case", - "rdfs:subClassOf": { - "@id": "bts:IndividualOrganism" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:PopulationOfIndividualOrganisms", - "@type": "rdfs:Class", - "rdfs:comment": null, - "rdfs:label": "PopulationOfIndividualOrganisms", - "rdfs:subClassOf": { - "@id": "bts:OrganismalEntity" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:Biosample", - "@type": "rdfs:Class", - "rdfs:comment": null, - "rdfs:label": "Biosample", - "rdfs:subClassOf": { - "@id": "bts:OrganismalEntity" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:DiseaseOrPhenotypicFeature", - "@type": "rdfs:Class", - "rdfs:comment": "Either one of a disease or an individual phenotypic feature. Some knowledge resources such as Monarch treat these as distinct, others such as MESH conflate.", - "rdfs:label": "DiseaseOrPhenotypicFeature", - "rdfs:subClassOf": { - "@id": "bts:BiologicalEntity" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:Disease", - "@type": "rdfs:Class", - "rdfs:comment": null, - "rdfs:label": "Disease", - "rdfs:subClassOf": { - "@id": "bts:DiseaseOrPhenotypicFeature" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:PhenotypicFeature", - "@type": "rdfs:Class", - "rdfs:comment": null, - "rdfs:label": "PhenotypicFeature", - "rdfs:subClassOf": { - "@id": "bts:DiseaseOrPhenotypicFeature" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:Environment", - "@type": "rdfs:Class", - "rdfs:comment": "A feature of the environment of an organism that influences one or more phenotypic features of that organism, potentially mediated by genes", - "rdfs:label": "Environment", - "rdfs:subClassOf": { - "@id": "bts:BiologicalEntity" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:InformationContentEntity", - "@type": "rdfs:Class", - "rdfs:comment": "a piece of information that typically describes some piece of biology or is used as support.", - "rdfs:label": "InformationContentEntity", - "rdfs:subClassOf": { - "@id": "schema:Thing" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:ConfidenceLevel", - "@type": "rdfs:Class", - "rdfs:comment": "Level of confidence in a statement", - "rdfs:label": "ConfidenceLevel", - "rdfs:subClassOf": { - "@id": "bts:InformationContentEntity" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:EvidenceType", - "@type": "rdfs:Class", - "rdfs:comment": "Class of evidence that supports an association", - "rdfs:label": "EvidenceType", - "rdfs:subClassOf": { - "@id": "bts:InformationContentEntity" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:Publication", - "@type": "rdfs:Class", - "rdfs:comment": "Any published piece of information. Can refer to a whole publication, or to a part of it (e.g. a figure, figure legend, or section highlighted by NLP). The scope is intended to be general and include information published on the web as well as journals.", - "rdfs:label": "Publication", - "rdfs:subClassOf": { - "@id": "bts:InformationContentEntity" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:MolecularEntity", - "@type": "rdfs:Class", - "rdfs:comment": "A gene, gene product, small molecule or macromolecule (including protein complex)", - "rdfs:label": "MolecularEntity", - "rdfs:subClassOf": { - "@id": "bts:BiologicalEntity" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:ChemicalSubstance", - "@type": "rdfs:Class", - "rdfs:comment": "May be a chemical entity or a formulation with a chemical entity as active ingredient, or a complex material with multiple chemical entities as part", - "rdfs:label": "ChemicalSubstance", - "rdfs:subClassOf": { - "@id": "bts:MolecularEntity" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:Drug", - "@type": "rdfs:Class", - "rdfs:comment": "A substance intended for use in the diagnosis, cure, mitigation, treatment, or prevention of disease", - "rdfs:label": "Drug", - "rdfs:subClassOf": { - "@id": "bts:ChemicalSubstance" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:Metabolite", - "@type": "rdfs:Class", - "rdfs:comment": "Any intermediate or product resulting from metabolism. Includes primary and secondary metabolites.", - "rdfs:label": "Metabolite", - "rdfs:subClassOf": { - "@id": "bts:ChemicalSubstance" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:AnatomicalEntity", - "@type": "rdfs:Class", - "rdfs:comment": "A subcellular location, cell type or gross anatomical part", - "rdfs:label": "AnatomicalEntity", - "rdfs:subClassOf": { - "@id": "bts:OrganismalEntity" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:LifeStage", - "@type": "rdfs:Class", - "rdfs:comment": "A stage of development or growth of an organism, including post-natal adult stages", - "rdfs:label": "LifeStage", - "rdfs:subClassOf": { - "@id": "bts:OrganismalEntity" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:PlanetaryEntity", - "@type": "rdfs:Class", - "rdfs:comment": "Any entity or process that exists at the level of the whole planet", - "rdfs:label": "PlanetaryEntity", - "rdfs:subClassOf": { - "@id": "schema:Thing" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:EnvironmentalProcess", - "@type": "rdfs:Class", - "rdfs:comment": null, - "rdfs:label": "EnvironmentalProcess", - "rdfs:subClassOf": { - "@id": "bts:PlanetaryEntity" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:EnvironmentalFeature", - "@type": "rdfs:Class", - "rdfs:comment": null, - "rdfs:label": "EnvironmentalFeature", - "rdfs:subClassOf": { - "@id": "bts:PlanetaryEntity" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:ClinicalEntity", - "@type": "rdfs:Class", - "rdfs:comment": "Any entity or process that exists in the clinical domain and outside the biological realm. Diseases are placed under biological entities", - "rdfs:label": "ClinicalEntity", - "rdfs:subClassOf": { - "@id": "schema:Thing" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:ClinicalTrial", - "@type": "rdfs:Class", - "rdfs:comment": null, - "rdfs:label": "ClinicalTrial", - "rdfs:subClassOf": { - "@id": "bts:ClinicalEntity" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:ClinicalIntervention", - "@type": "rdfs:Class", - "rdfs:comment": null, - "rdfs:label": "ClinicalIntervention", - "rdfs:subClassOf": { - "@id": "bts:ClinicalEntity" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:Device", - "@type": "rdfs:Class", - "rdfs:comment": "A thing made or adapted for a particular purpose, especially a piece of mechanical or electronic equipment", - "rdfs:label": "Device", - "rdfs:subClassOf": { - "@id": "schema:Thing" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:GenomicEntity", - "@type": "rdfs:Class", - "rdfs:comment": "an entity that can either be directly located on a genome (gene, transcript, exon, regulatory region) or is encoded in a genome (protein)", - "rdfs:label": "GenomicEntity", - "rdfs:subClassOf": { - "@id": "bts:MolecularEntity" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:Genome", - "@type": "rdfs:Class", - "rdfs:comment": "A genome is the sum of genetic material within a cell or virion.", - "rdfs:label": "Genome", - "rdfs:subClassOf": { - "@id": "bts:GenomicEntity" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:Transcript", - "@type": "rdfs:Class", - "rdfs:comment": "An RNA synthesized on a DNA or RNA template by an RNA polymerase", - "rdfs:label": "Transcript", - "rdfs:subClassOf": { - "@id": "bts:GenomicEntity" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:Exon", - "@type": "rdfs:Class", - "rdfs:comment": "A region of the transcript sequence within a gene which is not removed from the primary RNA transcript by RNA splicing", - "rdfs:label": "Exon", - "rdfs:subClassOf": { - "@id": "bts:GenomicEntity" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:CodingSequence", - "@type": "rdfs:Class", - "rdfs:comment": null, - "rdfs:label": "CodingSequence", - "rdfs:subClassOf": { - "@id": "bts:GenomicEntity" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:MacromolecularMachine", - "@type": "rdfs:Class", - "rdfs:comment": "A union of gene, gene product, and macromolecular complex. These are the basic units of function in a cell. They either carry out individual biological activities, or they encode molecules which do this.", - "rdfs:label": "MacromolecularMachine", - "rdfs:subClassOf": { - "@id": "bts:GenomicEntity" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:GeneOrGeneProduct", - "@type": "rdfs:Class", - "rdfs:comment": "a union of genes or gene products. Frequently an identifier for one will be used as proxy for another", - "rdfs:label": "GeneOrGeneProduct", - "rdfs:subClassOf": { - "@id": "bts:MacromolecularMachine" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:Gene", - "@type": "rdfs:Class", - "rdfs:comment": null, - "rdfs:label": "Gene", - "rdfs:subClassOf": { - "@id": "bts:GeneOrGeneProduct" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:GeneProduct", - "@type": "rdfs:Class", - "rdfs:comment": "The functional molecular product of a single gene. Gene products are either proteins or functional RNA molecules", - "rdfs:label": "GeneProduct", - "rdfs:subClassOf": { - "@id": "bts:GeneOrGeneProduct" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:Protein", - "@type": "rdfs:Class", - "rdfs:comment": "A gene product that is composed of a chain of amino acid sequences and is produced by ribosome-mediated translation of mRNA", - "rdfs:label": "Protein", - "rdfs:subClassOf": { - "@id": "bts:GeneProduct" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:GeneProductIsoform", - "@type": "rdfs:Class", - "rdfs:comment": "This is an abstract class that can be mixed in with different kinds of gene products to indicate that the gene product is intended to represent a specific isoform rather than a canonical or reference or generic product. The designation of canonical or reference may be arbitrary, or it may represent the superclass of all isoforms.", - "rdfs:label": "GeneProductIsoform", - "rdfs:subClassOf": { - "@id": "bts:GeneProduct" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:ProteinIsoform", - "@type": "rdfs:Class", - "rdfs:comment": "Represents a protein that is a specific isoform of the canonical or reference protein. See https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4114032/", - "rdfs:label": "ProteinIsoform", - "rdfs:subClassOf": { - "@id": "bts:Protein" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:RnaProduct", - "@type": "rdfs:Class", - "rdfs:comment": null, - "rdfs:label": "RnaProduct", - "rdfs:subClassOf": { - "@id": "bts:GeneProduct" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:RnaProductIsoform", - "@type": "rdfs:Class", - "rdfs:comment": "Represents a protein that is a specific isoform of the canonical or reference RNA", - "rdfs:label": "RnaProductIsoform", - "rdfs:subClassOf": { - "@id": "bts:RnaProduct" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:NoncodingRnaProduct", - "@type": "rdfs:Class", - "rdfs:comment": null, - "rdfs:label": "NoncodingRnaProduct", - "rdfs:subClassOf": { - "@id": "bts:RnaProduct" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:Microrna", - "@type": "rdfs:Class", - "rdfs:comment": null, - "rdfs:label": "Microrna", - "rdfs:subClassOf": { - "@id": "bts:NoncodingRnaProduct" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:MacromolecularComplex", - "@type": "rdfs:Class", - "rdfs:comment": null, - "rdfs:label": "MacromolecularComplex", - "rdfs:subClassOf": { - "@id": "bts:MacromolecularMachine" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:GeneFamily", - "@type": "rdfs:Class", - "rdfs:comment": "any grouping of multiple genes or gene products related by common descent", - "rdfs:label": "GeneFamily", - "rdfs:subClassOf": { - "@id": "bts:MolecularEntity" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - } - }, - { - "@id": "bts:Genotype", - "@type": "rdfs:Class", - "rdfs:comment": "An information content entity that describes a genome by specifying the total variation in genomic sequence and/or gene expression, relative to some extablished background", - 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"@id": "bts:MolecularEntity" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": { - "@id": "bts:MolecularEntity" - } - }, - { - "@id": "bts:decreasesAbundanceOf", - "@type": "rdf:Property", - "rdfs:comment": "holds between two molecular entities where the action or effect of one decreases the amount of the other within a system of interest", - "rdfs:label": "decreasesAbundanceOf", - "schema:domainIncludes": { - "@id": "bts:MolecularEntity" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": { - "@id": "bts:MolecularEntity" - } - }, - { - "@id": "bts:affectsActivityOf", - "@type": "rdf:Property", - "rdfs:comment": "holds between two molecular entities where the action or effect of one changes the activity of the other within a system of interest", - "rdfs:label": "affectsActivityOf", - "schema:domainIncludes": { - "@id": "bts:MolecularEntity" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - 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"@type": "rdf:Property", - "rdfs:comment": "holds between two molecular entities where the action or effect of one changes the level of expression of the other within a system of interest", - "rdfs:label": "affectsExpressionOf", - "schema:domainIncludes": { - "@id": "bts:MolecularEntity" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": { - "@id": "bts:GenomicEntity" - } - }, - { - "@id": "bts:increasesExpressionOf", - "@type": "rdf:Property", - "rdfs:comment": "holds between two molecular entities where the action or effect of one increases the level of expression of the other within a system of interest", - "rdfs:label": "increasesExpressionOf", - "schema:domainIncludes": { - "@id": "bts:MolecularEntity" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": { - "@id": "bts:GenomicEntity" - } - }, - { - "@id": "bts:decreasesExpressionOf", - "@type": "rdf:Property", - "rdfs:comment": "holds between two molecular entities where the action or effect of one decreases the level of expression of the other within a system of interest", - "rdfs:label": "decreasesExpressionOf", - "schema:domainIncludes": { - "@id": "bts:MolecularEntity" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": { - "@id": "bts:GenomicEntity" - } - }, - { - "@id": "bts:affectsFoldingOf", - "@type": "rdf:Property", - "rdfs:comment": "holds between two molecular entities where the action or effect of one changes the rate or quality of folding of the other ", - "rdfs:label": "affectsFoldingOf", - "schema:domainIncludes": { - "@id": "bts:MolecularEntity" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": { - "@id": "bts:MolecularEntity" - } - }, - { - "@id": "bts:increasesFoldingOf", - "@type": "rdf:Property", - "rdfs:comment": "holds between two molecular entities where the action or effect of one increases the rate or quality of folding of the other ", - "rdfs:label": "increasesFoldingOf", - "schema:domainIncludes": { - "@id": "bts:MolecularEntity" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": { - "@id": "bts:MolecularEntity" - } - }, - { - "@id": "bts:decreasesFoldingOf", - "@type": "rdf:Property", - "rdfs:comment": "holds between two molecular entities where the action or effect of one decreases the rate or quality of folding of the other ", - "rdfs:label": "decreasesFoldingOf", - "schema:domainIncludes": { - "@id": "bts:MolecularEntity" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": { - "@id": "bts:MolecularEntity" - } - }, - { - "@id": "bts:affectsLocalizationOf", - "@type": "rdf:Property", - "rdfs:comment": "holds between two molecular entities where the action or effect of one changes the localization of the other within a system of interest", - "rdfs:label": "affectsLocalizationOf", - "schema:domainIncludes": { - "@id": "bts:MolecularEntity" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": { - "@id": "bts:MolecularEntity" - 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"@type": "rdf:Property", - "rdfs:comment": "holds between two molecular entities where the action or effect of one impacts the metabolic processing of the other within a system of interest", - "rdfs:label": "affectsMetabolicProcessingOf", - "schema:domainIncludes": { - "@id": "bts:MolecularEntity" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": { - "@id": "bts:MolecularEntity" - } - }, - { - "@id": "bts:increasesMetabolicProcessingOf", - "@type": "rdf:Property", - "rdfs:comment": "holds between two molecular entities where the action or effect of one increases the rate of metabolic processing of the other within a system of interest", - "rdfs:label": "increasesMetabolicProcessingOf", - "schema:domainIncludes": { - "@id": "bts:MolecularEntity" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": { - "@id": "bts:MolecularEntity" - } - }, - { - "@id": "bts:decreasesMetabolicProcessingOf", - "@type": "rdf:Property", - "rdfs:comment": "holds between two molecular entities where the action or effect of one decreases the rate of metabolic processing of the other within a system of interest", - "rdfs:label": "decreasesMetabolicProcessingOf", - "schema:domainIncludes": { - "@id": "bts:MolecularEntity" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": { - "@id": "bts:MolecularEntity" - } - }, - { - "@id": "bts:affectsMolecularModificationOf", - "@type": "rdf:Property", - "rdfs:comment": "holds between two molecular entities where the action or effect of one leads changes in the molecular modification(s) of the other (e.g. via post-translational modifications of proteins such as the addition of phosphoryl group, or via redox reaction that adds or subtracts electrons)", - "rdfs:label": "affectsMolecularModificationOf", - "schema:domainIncludes": { - "@id": "bts:MolecularEntity" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": { - "@id": "bts:MolecularEntity" - } - }, - { - "@id": "bts:increasesMolecularModificationOf", - "@type": "rdf:Property", - "rdfs:comment": "holds between two molecular entities where the action or effect of one leads to increased molecular modification(s) of the other (e.g. via post-translational modifications of proteins such as the addition of phosphoryl group, or via redox reaction that adds or subtracts electrons)", - "rdfs:label": "increasesMolecularModificationOf", - "schema:domainIncludes": { - "@id": "bts:MolecularEntity" - }, - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": { - "@id": "bts:MolecularEntity" - } - }, - { - "@id": "bts:decreasesMolecularModificationOf", - "@type": "rdf:Property", - "rdfs:comment": "holds between two molecular entities where the action or effect of one leads to decreased molecular modification(s) of the other (e.g. via post-translational modifications of proteins such as the addition of phosphoryl group, or via redox reaction that adds or subtracts electrons)", - 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}, - { - "@id": "bts:Hyperlink" - }, - { - "@id": "bts:Svs" - }, - { - "@id": "bts:Md" - }, - { - "@id": "bts:Flagstat" - }, - { - "@id": "bts:Gtf" - }, - { - "@id": "bts:Raw" - }, - { - "@id": "bts:Msf" - }, - { - "@id": "bts:Rmd" - }, - { - "@id": "bts:BednarrowPeak" - }, - { - "@id": "bts:BedbroadPeak" - }, - { - "@id": "bts:BedgappedPeak" - }, - { - "@id": "bts:Avi" - }, - { - "@id": "bts:Pzfx" - }, - { - "@id": "bts:Fig" - }, - { - "@id": "bts:Xml" - }, - { - "@id": "bts:Tar" - }, - { - "@id": "bts:Rscript" - }, - { - "@id": "bts:Abf" - }, - { - "@id": "bts:Bpm" - }, - { - "@id": "bts:Dat" - }, - { - "@id": "bts:Jpg" - }, - { - "@id": "bts:Locs" - }, - { - "@id": "bts:Sentrixdescriptorfile" - }, - { - "@id": "bts:Pythonscript" - }, - { - "@id": "bts:Sav" - }, - { - "@id": "bts:Gzip" - }, - { - "@id": "bts:Sdf" - }, - { - "@id": "bts:RData" - }, - { - "@id": "bts:Hic" - }, - { - "@id": "bts:Ab1" - }, - { - "@id": "bts:7z" - }, - { - "@id": "bts:Gff3" - }, - { - "@id": "bts:Json" - }, - { - "@id": "bts:Sqlite" - }, - { - "@id": "bts:Svg" - }, - { - "@id": "bts:Sra" - }, - { - "@id": "bts:Recal" - }, - { - "@id": "bts:Tranches" - }, - { - "@id": "bts:Mtx" - }, - { - "@id": "bts:TagAlign" - }, - { - "@id": "bts:Dup" - }, - { - "@id": "bts:DICOM" - }, - { - "@id": "bts:Czi" - }, - { - "@id": "bts:Mex" - }, - { - "@id": "bts:Cloupe" - }, - { - "@id": "bts:Am" - }, - { - "@id": "bts:Cellam" - }, - { - "@id": "bts:Mpg" - }, - { - "@id": "bts:M" - }, - { - "@id": "bts:MzML" - }, - { - "@id": "bts:Scn" - } - ], - "sms:displayName": "File Format", - "sms:required": "sms:true", - "sms:validationRules": [] - }, - { - "@id": "bts:Checksum", - "@type": "rdfs:Class", - "rdfs:comment": "MD5 checksum of the BAM file", - "rdfs:label": "Checksum", - "rdfs:subClassOf": [ - { - "@id": "bts:InformationContentEntity" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Checksum", - "sms:required": "sms:true", - "sms:validationRules": [] - }, - { - "@id": "bts:ImagingLevel2", - "@type": "rdfs:Class", - "rdfs:comment": "Raw and pre-processed image data", - "rdfs:label": "ImagingLevel2", - "rdfs:subClassOf": [ - { - "@id": "bts:Assay" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Imaging Level 2", - "sms:required": "sms:false", - "sms:requiresComponent": [ - { - "@id": "bts:Biospecimen" - }, - { - "@id": "bts:ImagingLevel2Channels" - } - ], - "sms:requiresDependency": [ - { - "@id": "bts:Component" - }, - { - "@id": "bts:Filename" - }, - { - "@id": "bts:FileFormat" - }, - { - "@id": "bts:LabID" - }, - { - "@id": "bts:ChannelMetadataFilename" - }, - { - "@id": "bts:ImagingAssayType" - }, - { - "@id": "bts:ProtocolLink" - }, - { - "@id": "bts:SoftwareandVersion" - }, - { - "@id": "bts:Microscope" - }, - { - "@id": "bts:Objective" - }, - { - "@id": "bts:NominalMagnification" - }, - { - "@id": "bts:LensNA" - }, - { - "@id": "bts:WorkingDistance" - }, - { - "@id": "bts:WorkingDistanceUnit" - }, - { - "@id": "bts:Immersion" - }, - { - "@id": "bts:Pyramid" - }, - { - "@id": "bts:Zstack" - }, - { - "@id": "bts:Tseries" - }, - { - "@id": "bts:PassedQC" - }, - { - "@id": "bts:Comment" - }, - { - "@id": "bts:FOVnumber" - }, - { - "@id": "bts:FOVX" - }, - { - "@id": "bts:FOVXUnit" - }, - { - "@id": "bts:FOVY" - }, - { - "@id": "bts:FOVYUnit" - }, - { - "@id": "bts:FrameAveraging" - }, - { - "@id": "bts:ImageID" - }, - { - "@id": "bts:DimensionOrder" - }, - { - "@id": "bts:PhysicalSizeX" - }, - { - "@id": "bts:PhysicalSizeXUnit" - }, - { - "@id": "bts:PhysicalSizeY" - }, - { - "@id": "bts:PhysicalSizeYUnit" - }, - { - "@id": "bts:PhysicalSizeZ" - }, - { - "@id": "bts:PhysicalSizeZUnit" - }, - { - "@id": "bts:PixelsBigEndian" - }, - { - "@id": "bts:PlaneCount" - }, - { - "@id": "bts:SizeC" - }, - { - "@id": "bts:SizeT" - }, - { - "@id": "bts:SizeX" - }, - { - "@id": "bts:SizeY" - }, - { - "@id": "bts:SizeZ" - }, - { - "@id": "bts:PixelType" - } - ], - "sms:validationRules": [] - }, - { - "@id": "bts:ImagingLevel2Channels", - "@type": "rdfs:Class", - "rdfs:comment": "Channel-level Metadata Attributes", - "rdfs:label": "ImagingLevel2Channels", - "rdfs:subClassOf": [ - { - "@id": "bts:ImagingLevel2" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Imaging Level 2 Channels", - "sms:required": "sms:false", - "sms:requiresDependency": [ - { - "@id": "bts:ChannelID" - }, - { - "@id": "bts:ChannelName" - }, - { - "@id": "bts:ChannelPassedQC" - }, - { - "@id": "bts:CycleNumber" - }, - { - "@id": "bts:SubCycleNumber" - }, - { - "@id": "bts:TargetName" - }, - { - "@id": "bts:AntibodyName" - }, - { - "@id": "bts:RRIDidentifier" - }, - { - "@id": "bts:Fluorophore" - }, - { - "@id": "bts:Clone" - }, - { - "@id": "bts:Lot" - }, - { - "@id": "bts:Vendor" - }, - { - "@id": "bts:CatalogNumber" - }, - { - "@id": "bts:ExcitationWavelength" - }, - { - "@id": "bts:EmissionWavelength" - }, - { - "@id": "bts:ExcitationBandwidth" - }, - { - "@id": "bts:EmissionBandwidth" - }, - { - "@id": "bts:MetalIsotopeElement" - }, - { - "@id": "bts:MetalIsotopeMass" - }, - { - "@id": "bts:OligoBarcodeUpperStrand" - }, - { - "@id": "bts:OligoBarcodeLowerStrand" - }, - { - "@id": "bts:Dilution" - }, - { - "@id": "bts:Concentration" - } - ], - "sms:validationRules": [] - }, - { - "@id": "bts:ImagingAssayType", - "@type": "rdfs:Class", - "rdfs:comment": "Type of imaging assay", - "rdfs:label": "ImagingAssayType", - "rdfs:subClassOf": [ - { - "@id": "bts:ImagingLevel2" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:H&E" - }, - { - "@id": "bts:CyCIF" - }, - { - "@id": "bts:T-CyCIF" - }, - { - "@id": "bts:IHC" - }, - { - "@id": "bts:MIHC" - }, - { - "@id": "bts:MxIF" - }, - { - "@id": "bts:SABER" - }, - { - "@id": "bts:IMC" - }, - { - "@id": "bts:CODEX" - }, - { - "@id": "bts:GeoMX-DSP" - }, - { - "@id": "bts:MIBI" - }, - { - "@id": "bts:MERFISH" - }, - { - "@id": "bts:ExSeq" - }, - { - "@id": "bts:NotApplicable" - } - ], - "sms:displayName": "Imaging Assay Type", - "sms:required": "sms:true", - "sms:validationRules": [] - }, - { - "@id": "bts:ChannelMetadataFilename", - "@type": "rdfs:Class", - "rdfs:comment": "Full path of uploaded companion CSV file containing channel-level metadata details", - "rdfs:label": "ChannelMetadataFilename", - "rdfs:subClassOf": [ - { - "@id": "bts:ImagingLevel2" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Channel Metadata Filename", - "sms:required": "sms:true", - "sms:validationRules": [] - }, - { - "@id": "bts:ImageAcquisitionDate", - "@type": "rdfs:Class", - "rdfs:comment": "Date of image acquisition", - "rdfs:label": "ImageAcquisitionDate", - "rdfs:subClassOf": [ - { - "@id": "bts:ImagingLevel2" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Image Acquisition Date", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Microscope", - "@type": "rdfs:Class", - "rdfs:comment": "Microscope type (manufacturer, model, etc) used for this experiment", - "rdfs:label": "Microscope", - "rdfs:subClassOf": [ - { - "@id": "bts:ImagingLevel2" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Microscope", - "sms:required": "sms:true", - "sms:validationRules": [] - }, - { - "@id": "bts:Objective", - "@type": "rdfs:Class", - "rdfs:comment": "Objective", - "rdfs:label": "Objective", - "rdfs:subClassOf": [ - { - "@id": "bts:ImagingLevel2" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Objective", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NominalMagnification", - "@type": "rdfs:Class", - "rdfs:comment": "The magnification of the lens as specified by the manufacturer - i.e. '60' is a 60X lens. floating point value > 1(no units)", - "rdfs:label": "NominalMagnification", - "rdfs:subClassOf": [ - { - "@id": "bts:ImagingLevel2" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NominalMagnification", - "sms:required": "sms:true", - "sms:validationRules": [] - }, - { - "@id": "bts:LensNA", - "@type": "rdfs:Class", - "rdfs:comment": "The numerical aperture of the lens. Floating point value > 0.", - "rdfs:label": "LensNA", - "rdfs:subClassOf": [ - { - "@id": "bts:ImagingLevel2" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "LensNA", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:WorkingDistance", - "@type": "rdfs:Class", - "rdfs:comment": "The working distance of the lens, expressed as a floating point number. Floating point > 0.", - "rdfs:label": "WorkingDistance", - "rdfs:subClassOf": [ - { - "@id": "bts:ImagingLevel2" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "WorkingDistance", - "sms:required": "sms:false", - "sms:requiresDependency": [ - { - "@id": "bts:WorkingDistanceUnit" - } - ], - "sms:validationRules": [] - }, - { - "@id": "bts:WorkingDistanceUnit", - "@type": "rdfs:Class", - "rdfs:comment": "The units of the working distance. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", - "rdfs:label": "WorkingDistanceUnit", - "rdfs:subClassOf": [ - { - "@id": "bts:ImagingLevel2" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:Cm" - }, - { - "@id": "bts:Mm" - }, - { - "@id": "bts:Μm" - }, - { - "@id": "bts:Nm" - }, - { - "@id": "bts:Å" - } - ], - "sms:displayName": "WorkingDistanceUnit", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Immersion", - "@type": "rdfs:Class", - "rdfs:comment": "Immersion medium", - "rdfs:label": "Immersion", - "rdfs:subClassOf": [ - { - "@id": "bts:ImagingLevel2" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:Air" - }, - { - "@id": "bts:Oil" - }, - { - "@id": "bts:Water" - }, - { - "@id": "bts:Other" - } - ], - "sms:displayName": "Immersion", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Pyramid", - "@type": "rdfs:Class", - "rdfs:comment": "Does data file contain pyramid of images", - "rdfs:label": "Pyramid", - "rdfs:subClassOf": [ - { - "@id": "bts:ImagingLevel2" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:Yes" - }, - { - "@id": "bts:No" - } - ], - "sms:displayName": "Pyramid", - "sms:required": "sms:true", - "sms:validationRules": [] - }, - { - "@id": "bts:Zstack", - "@type": "rdfs:Class", - "rdfs:comment": "Does data file contain a Z-stack of images", - "rdfs:label": "Zstack", - "rdfs:subClassOf": [ - { - "@id": "bts:ImagingLevel2" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:Yes" - }, - { - "@id": "bts:No" - } - ], - "sms:displayName": "Zstack", - "sms:required": "sms:true", - "sms:validationRules": [] - }, - { - "@id": "bts:Tseries", - "@type": "rdfs:Class", - "rdfs:comment": "Does data file contain a time-series of images", - "rdfs:label": "Tseries", - "rdfs:subClassOf": [ - { - "@id": "bts:ImagingLevel2" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:Yes" - }, - { - "@id": "bts:No" - } - ], - "sms:displayName": "Tseries", - "sms:required": "sms:true", - "sms:validationRules": [] - }, - { - "@id": "bts:PassedQC", - "@type": "rdfs:Class", - "rdfs:comment": "Did all channels pass QC (if not add free text Comment)", - "rdfs:label": "PassedQC", - "rdfs:subClassOf": [ - { - "@id": "bts:ImagingLevel2" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:Yes" - }, - { - "@id": "bts:No-ChannelsQC" - } - ], - "sms:displayName": "Passed QC", - "sms:required": "sms:true", - "sms:validationRules": [] - }, - { - "@id": "bts:No-ChannelsQC", - "@type": "rdfs:Class", - "rdfs:comment": "Not all channels passed QC", - "rdfs:label": "No-ChannelsQC", - "rdfs:subClassOf": [ - { - "@id": "bts:ImagingLevel2" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "No - Channels QC", - "sms:required": "sms:false", - "sms:requiresDependency": [ - { - "@id": "bts:Comment" - } - ], - "sms:validationRules": [] - }, - { - "@id": "bts:Comment", - "@type": "rdfs:Class", - "rdfs:comment": "Free text field (generally for QC comment)", - "rdfs:label": "Comment", - "rdfs:subClassOf": [ - { - "@id": "bts:ImagingLevel2" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Comment", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:FOVnumber", - "@type": "rdfs:Class", - "rdfs:comment": "Index of FOV (as it pertains to its sequence order). Integer >= 1", - "rdfs:label": "FOVnumber", - "rdfs:subClassOf": [ - { - "@id": "bts:ImagingLevel2" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "FOV number", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:FOVX", - "@type": "rdfs:Class", - "rdfs:comment": "Field of view X dimension. Floating point", - "rdfs:label": "FOVX", - "rdfs:subClassOf": [ - { - "@id": "bts:ImagingLevel2" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "FOVX", - "sms:required": "sms:false", - "sms:requiresDependency": [ - { - "@id": "bts:FOVXUnit" - } - ], - "sms:validationRules": [] - }, - { - "@id": "bts:FOVXUnit", - "@type": "rdfs:Class", - "rdfs:comment": "Field of view X dimension units. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", - "rdfs:label": "FOVXUnit", - "rdfs:subClassOf": [ - { - "@id": "bts:ImagingLevel2" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:Cm" - }, - { - "@id": "bts:Mm" - }, - { - "@id": "bts:Μm" - }, - { - "@id": "bts:Nm" - }, - { - "@id": "bts:Å" - } - ], - "sms:displayName": "FOVXUnit", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:FOVY", - "@type": "rdfs:Class", - "rdfs:comment": "Field of view Y dimension. Floating point value", - "rdfs:label": "FOVY", - "rdfs:subClassOf": [ - { - "@id": "bts:ImagingLevel2" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "FOVY", - "sms:required": "sms:false", - "sms:requiresDependency": [ - { - "@id": "bts:FOVYUnit" - } - ], - "sms:validationRules": [] - }, - { - "@id": "bts:FOVYUnit", - "@type": "rdfs:Class", - "rdfs:comment": "Field of view Y dimension units. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", - "rdfs:label": "FOVYUnit", - "rdfs:subClassOf": [ - { - "@id": "bts:ImagingLevel2" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:Cm" - }, - { - "@id": "bts:Mm" - }, - { - "@id": "bts:Μm" - }, - { - "@id": "bts:Nm" - }, - { - "@id": "bts:Å" - } - ], - "sms:displayName": "FOVYUnit", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:FrameAveraging", - "@type": "rdfs:Class", - "rdfs:comment": "Number of frames averaged together (if no averaging, set to 1). Integer >= 1", - "rdfs:label": "FrameAveraging", - "rdfs:subClassOf": [ - { - "@id": "bts:ImagingLevel2" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Frame Averaging", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ImageID", - "@type": "rdfs:Class", - "rdfs:comment": "Unique internal image identifier. eg \"\"Image:0\"\". (To be extracted from OME-XML)", - "rdfs:label": "ImageID", - "rdfs:subClassOf": [ - { - "@id": "bts:ImagingLevel2" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Image ID", - "sms:required": "sms:true", - "sms:validationRules": [] - }, - { - "@id": "bts:DimensionOrder", - "@type": "rdfs:Class", - "rdfs:comment": "The order in which the individual planes of data are interleaved.", - "rdfs:label": "DimensionOrder", - "rdfs:subClassOf": [ - { - "@id": "bts:ImagingLevel2" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:XYZCT" - }, - { - "@id": "bts:XYZTC" - }, - { - "@id": "bts:XYCTZ" - }, - { - "@id": "bts:XYCZT" - }, - { - "@id": "bts:XYTZC" - }, - { - "@id": "bts:ZYX" - } - ], - "sms:displayName": "DimensionOrder", - "sms:required": "sms:true", - "sms:validationRules": [] - }, - { - "@id": "bts:PhysicalSizeX", - "@type": "rdfs:Class", - "rdfs:comment": "Physical size (X-dimension) of a pixel. Units are set by PhysicalSizeXUnit. Floating point value > 0.", - "rdfs:label": "PhysicalSizeX", - "rdfs:subClassOf": [ - { - "@id": "bts:ImagingLevel2" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "PhysicalSizeX", - "sms:required": "sms:true", - "sms:requiresDependency": [ - { - "@id": "bts:PhysicalSizeXUnit" - } - ], - "sms:validationRules": [] - }, - { - "@id": "bts:PhysicalSizeXUnit", - "@type": "rdfs:Class", - "rdfs:comment": "The units of the physical size of a pixel. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", - "rdfs:label": "PhysicalSizeXUnit", - "rdfs:subClassOf": [ - { - "@id": "bts:ImagingLevel2" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:Cm" - }, - { - "@id": "bts:Mm" - }, - { - "@id": "bts:Μm" - }, - { - "@id": "bts:Nm" - }, - { - "@id": "bts:Å" - } - ], - "sms:displayName": "PhysicalSizeXUnit", - "sms:required": "sms:true", - "sms:validationRules": [] - }, - { - "@id": "bts:PhysicalSizeY", - "@type": "rdfs:Class", - "rdfs:comment": "Physical size (Y-dimension) of a pixel. Units are set by PhysicalSizeYUnit. Floating point value > 0.", - "rdfs:label": "PhysicalSizeY", - "rdfs:subClassOf": [ - { - "@id": "bts:ImagingLevel2" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "PhysicalSizeY", - "sms:required": "sms:true", - "sms:requiresDependency": [ - { - "@id": "bts:PhysicalSizeYUnit" - } - ], - "sms:validationRules": [] - }, - { - "@id": "bts:PhysicalSizeYUnit", - "@type": "rdfs:Class", - "rdfs:comment": "The units of the physical size of a pixel. 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}, - { - "@id": "bts:HodgkinlymphomaNOS" - }, - { - "@id": "bts:HodgkinparagranulomaNOS" - }, - { - "@id": "bts:Hodgkinsarcoma" - }, - { - "@id": "bts:InfiltratingbasalcellcarcinomaNOS" - }, - { - "@id": "bts:InfiltratingductcarcinomaNOS" - }, - { - "@id": "bts:Infiltratingductandcolloidcarcinoma" - }, - { - "@id": "bts:Infiltratingductandcribriformcarcinoma" - }, - { - "@id": "bts:Inflammatoryadenocarcinoma" - }, - { - "@id": "bts:Inflammatorycarcinoma" - }, - { - "@id": "bts:Interstitialcelltumorbenign" - }, - { - "@id": "bts:Interstitialcelltumormalignant" - }, - { - "@id": "bts:InterstitialcelltumorNOS" - }, - { - "@id": "bts:Intracysticpapilloma" - }, - { - "@id": "bts:Intradermalnevus" - }, - { - "@id": "bts:IntraductaladenocarcinomanoninfiltratingNOS" - }, - { - "@id": "bts:Intraductalandlobularcarcinoma" - }, - { - "@id": "bts:Intraductalcarcinomaandlobularcarcinomainsitu" - }, - { - "@id": "bts:Intraductalcarcinomaclinging" - }, - { - "@id": "bts:IntraductalcarcinomanoninfiltratingNOS" - 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}, - { - "@id": "bts:MalignantlymphomalymphocyticnodularNOS" - }, - { - "@id": "bts:MalignantlymphomalymphocyticNOS" - }, - { - "@id": "bts:Malignantlymphomamixedcelltypediffuse" - }, - { - "@id": "bts:Malignantlymphomamixedcelltypefollicular" - }, - { - "@id": "bts:Malignantlymphomamixedcelltypenodular" - }, - { - "@id": "bts:MalignantlymphomanodularNOS" - }, - { - "@id": "bts:Malignantlymphomanon-HodgkinNOS" - }, - { - "@id": "bts:MalignantlymphomaNOS" - }, - { - "@id": "bts:MalignantlymphomasmallBlymphocyticNOS" - }, - { - "@id": "bts:Malignantmelanomaincongenitalmelanocyticnevus" - }, - { - "@id": "bts:Malignantmelanomaingiantpigmentednevus" - }, - { - "@id": "bts:MalignantmelanomainHutchinsonmelanoticfreckle" - }, - { - "@id": "bts:Malignantmelanomainjunctionalnevus" - }, - { - "@id": "bts:Malignantmelanomainprecancerousmelanosis" - }, - { - "@id": "bts:MalignantmelanomaNOS" - }, - { - "@id": "bts:Malignantmelanomaregressing" - }, - { - "@id": "bts:Mammarycarcinomainsitu" - }, - { - "@id": "bts:Medullaryadenocarcinoma" - }, - { - "@id": "bts:MedullarycarcinomaNOS" - }, - { - "@id": "bts:Medullaryosteosarcoma" - }, - { - "@id": "bts:MedulloblastomaNOS" - }, - { - "@id": "bts:Melanoameloblastoma" - }, - { - "@id": "bts:Melanocyticnevus" - }, - { - "@id": "bts:Melanocytomaeyeball" - }, - { - "@id": "bts:MelanocytomaNOS" - }, - { - "@id": "bts:Melanomainsitu" - }, - { - "@id": "bts:Melanomamalignantofsoftparts" - }, - { - "@id": "bts:MelanomaNOS" - }, - { - "@id": "bts:Melanoticmedulloblastoma" - }, - { - "@id": "bts:MelanoticMPNST" - }, - { - "@id": "bts:Melanoticneuroectodermaltumor" - }, - { - "@id": "bts:Melanoticneurofibroma" - }, - { - "@id": "bts:Melanoticprogonoma" - }, - { - "@id": "bts:MelanoticpsammomatousMPNST" - }, - { - "@id": "bts:Melanoticschwannoma" - }, - { - "@id": "bts:Meningealmelanocytoma" - }, - { - "@id": "bts:Meningealmelanoma" - }, - { - "@id": "bts:Meningiomaanaplastic" - }, - { - "@id": "bts:Meningiomamalignant" - }, - { - "@id": "bts:MeningiomaNOS" - }, - { - "@id": "bts:MicropapillarycarcinomaNOS" - }, - { - "@id": "bts:Mixedadenocarcinomaandepidermoidcarcinoma" - }, - { - "@id": "bts:Mixedadenocarcinomaandsquamouscellcarcinoma" - }, - { - "@id": "bts:Mixedmedullary-follicularcarcinoma" - }, - { - "@id": "bts:Mixedmedullary-papillarycarcinoma" - }, - { - "@id": "bts:Mixedpancreaticendocrineandexocrinetumormalignant" - }, - { - "@id": "bts:Mixedpinealtumor" - }, - { - "@id": "bts:Mixedsmallcellcarcinoma" - }, - { - "@id": "bts:Mixedsquamouscellandglandularpapilloma" - }, - { - "@id": "bts:MixedtumormalignantNOS" - }, - { - "@id": "bts:MixedtumorNOS" - }, - { - "@id": "bts:MonocyticleukemiaNOS" - }, - { - "@id": "bts:Mucosal-associatedlymphoidtissuelymphoma" - }, - { - "@id": "bts:Mucousadenocarcinoma" - }, - { - "@id": "bts:Multiplemyeloma" - }, - { - "@id": "bts:MyelocyticleukemiaNOS" - }, - { - "@id": "bts:MyeloidleukemiaNOS" - }, - { - "@id": "bts:MyelomaNOS" - }, - { - "@id": "bts:Myoepithelioma" - }, - { - "@id": "bts:Neoplasmbenign" - }, - { - "@id": "bts:Neoplasmmalignant" - }, - { - "@id": "bts:Neoplasmmalignantuncertainwhetherprimaryormetastatic" - }, - { - "@id": "bts:Neoplasmmetastatic" - }, - { - "@id": "bts:NeoplasmNOS" - }, - { - "@id": "bts:Neoplasmsecondary" - }, - { - "@id": "bts:Neoplasmuncertainwhetherbenignormalignant" - }, - { - "@id": "bts:NephroblastomaNOS" - }, - { - "@id": "bts:NeuroblastomaNOS" - }, - { - "@id": "bts:NeuroendocrinecarcinomaNOS" - }, - { - "@id": "bts:NeuroepitheliomaNOS" - }, - { - "@id": "bts:NeurofibromaNOS" - }, - { - "@id": "bts:NeurofibromatosisNOS" - }, - { - "@id": "bts:Neurofibrosarcoma" - }, - { - "@id": "bts:Neurosarcoma" - }, - { - "@id": "bts:NevusNOS" - }, - { - "@id": "bts:Non-HodgkinlymphomaNOS" - }, - { - "@id": "bts:Non-invasivelowgradeserouscarcinoma" - }, - { - "@id": "bts:Non-lymphocyticleukemiaNOS" - }, - { - "@id": "bts:Non-smallcellcarcinoma" - }, - { - "@id": "bts:Nonpigmentednevus" - }, - { - "@id": "bts:NotReported" - }, - { - "@id": "bts:Oatcellcarcinoma" - }, - { - "@id": "bts:Osteoblastomamalignant" - }, - { - "@id": "bts:OsteoblastomaNOS" - }, - { - "@id": "bts:OsteosarcomaNOS" - }, - { - "@id": "bts:Pagetdiseaseandinfiltratingductcarcinomaofbreast" - }, - { - "@id": "bts:Pagetdiseaseandintraductalcarcinomaofbreast" - }, - { - "@id": "bts:Pagetdiseaseofbreast" - }, - { - "@id": "bts:Pagetdiseaseextramammary" - }, - { - "@id": "bts:Pagetdiseasemammary" - }, - { - "@id": "bts:Pagetoidreticulosis" - }, - { - "@id": "bts:Pancreaticendocrinetumorbenign" - }, - { - "@id": "bts:Pancreaticendocrinetumormalignant" - }, - { - "@id": "bts:Pancreaticendocrinetumornonfunctioning" - }, - { - "@id": "bts:PancreaticendocrinetumorNOS" - }, - { - "@id": "bts:Pancreaticmicroadenoma" - }, - { - "@id": "bts:Pancreatobiliaryneoplasmnon-invasive" - }, - { - "@id": "bts:Pancreatobiliary-typecarcinoma" - }, - { - "@id": "bts:Pancreatoblastoma" - }, - { - "@id": "bts:Papillaryadenocarcinomafollicularvariant" - }, - { - "@id": "bts:PapillaryadenocarcinomaNOS" - }, - { - "@id": "bts:Papillaryadenofibroma" - }, - { - "@id": "bts:PapillaryadenomaNOS" - }, - { - "@id": "bts:Papillaryandfollicularcarcinoma" - }, - { - "@id": "bts:Papillarycarcinomainsitu" - }, - { - "@id": "bts:PapillarycarcinomaNOS" - }, - { - "@id": "bts:PapillarycystadenomaNOS" - }, - { - "@id": "bts:Papillaryepidermoidcarcinoma" - }, - { - "@id": "bts:Papillaryglioneuronaltumor" - }, - { - "@id": "bts:Papillarymeningioma" - }, - { - "@id": "bts:Papillarymicrocarcinoma" - }, - { - "@id": "bts:Papillaryrenalcellcarcinoma" - }, - { - "@id": "bts:Papillaryserousadenocarcinoma" - }, - { - "@id": "bts:Papillaryserouscystadenocarcinoma" - }, - { - "@id": "bts:PapillaryserouscystadenomaNOS" - }, - { - "@id": "bts:Papillarysquamouscellcarcinoma" - }, - { - "@id": "bts:Papillarysquamouscellcarcinomainsitu" - }, - { - "@id": "bts:Papillarytransitionalcellcarcinoma" - }, - { - "@id": "bts:Papillarytumorofthepinealregion" - }, - { - "@id": "bts:Papillaryurothelialcarcinoma" - }, - { - "@id": "bts:Papillomaofbladder" - 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}, - { - "@id": "bts:PrecursorB-celllymphoblasticleukemia" - }, - { - "@id": "bts:PrecursorB-celllymphoblasticlymphoma" - }, - { - "@id": "bts:PrecursorcelllymphoblasticleukemiaNOS" - }, - { - "@id": "bts:PrecursorT-celllymphoblasticleukemia" - }, - { - "@id": "bts:PrecursorT-celllymphoblasticlymphoma" - }, - { - "@id": "bts:Preleukemia" - }, - { - "@id": "bts:Preleukemicsyndrome" - }, - { - "@id": "bts:Primaryamyloidosis" - }, - { - "@id": "bts:Pro-BALL" - }, - { - "@id": "bts:Pro-TALL" - }, - { - "@id": "bts:ProstaticintraepithelialneoplasiagradeIII" - }, - { - "@id": "bts:Pulmonaryadenomatosis" - }, - { - "@id": "bts:Pulmonaryarteryintimalsarcoma" - }, - { - "@id": "bts:Pulmonaryblastoma" - }, - { - "@id": "bts:Renalcarcinomacollectingducttype" - }, - { - "@id": "bts:Renalcelladenocarcinoma" - }, - { - "@id": "bts:Renalcellcarcinomachromophobetype" - }, - { - "@id": "bts:RenalcellcarcinomaNOS" - }, - { - "@id": "bts:Renalcellcarcinomasarcomatoid" - }, - { - "@id": "bts:Renalcellcarcinomaspindlecell" - }, - { - "@id": "bts:Renalcellcarcinomaunclassified" - }, - { - "@id": "bts:Renalmedullarycarcinoma" - }, - { - "@id": "bts:Rhabdoidmeningioma" - }, - { - "@id": "bts:Rhabdoidsarcoma" - }, - { - "@id": "bts:RhabdoidtumorNOS" - }, - { - "@id": "bts:RhabdomyomaNOS" - }, - { - "@id": "bts:Rhabdomyosarcomawithganglionicdifferentiation" - }, - { - "@id": "bts:RhabdomyosarcomaNOS" - }, - { - "@id": "bts:Rhabdosarcoma" - }, - { - "@id": "bts:Rodentulcer" - }, - { - "@id": "bts:SarcomaNOS" - }, - { - "@id": "bts:Sclerosinghemangioma" - }, - { - "@id": "bts:Sclerosinghepaticcarcinoma" - }, - { - "@id": "bts:Secondarycarcinoma" - }, - { - "@id": "bts:Secretorycarcinomaofbreast" - }, - { - "@id": "bts:SerouscystadenocarcinomaNOS" - }, - { - "@id": "bts:Seroussurfacepapillarycarcinoma" - }, - { - "@id": "bts:High-gradeserouscarcinoma" - }, - { - "@id": "bts:Skinappendagecarcinoma" - }, - { - "@id": "bts:SmallcellcarcinomaNOS" - }, - { - "@id": "bts:Smallcellneuroendocrinecarcinoma" - }, - { - "@id": "bts:Smallcellosteosarcoma" - }, - { - "@id": "bts:Smallcellsarcoma" - }, - { - "@id": "bts:Smallcongenitalnevus" - }, - { - "@id": "bts:SpindlecellcarcinomaNOS" - }, - { - "@id": "bts:SpindlecellmelanomaNOS" - }, - { - "@id": "bts:SplenicB-celllymphoma/leukemiaunclassifiable" - }, - { - "@id": "bts:SplenicdiffuseredpulpsmallB-celllymphoma" - }, - { - "@id": "bts:Spleniclymphomawithvillouslymphocytes" - }, - { - "@id": "bts:SplenicmarginalzoneB-celllymphoma" - }, - { - "@id": "bts:SplenicmarginalzonelymphomaNOS" - }, - { - "@id": "bts:SquamouscellcarcinomainsituNOS" - }, - { - "@id": "bts:Squamouscellcarcinomaadenoid" - }, - { - "@id": "bts:Squamouscellcarcinomaclearcelltype" - }, - { - "@id": "bts:SquamouscellcarcinomaNOS" - }, - { - "@id": "bts:Tlymphoblasticleukemia/lymphoma" - }, - { - "@id": "bts:T-celllargegranularlymphocyticleukemia" - }, - { - "@id": "bts:T-celllargegranularlymphocytosis" - }, - { - "@id": "bts:T-celllymphomaNOS" - }, - { - "@id": "bts:TeratomamalignantNOS" - }, - { - "@id": "bts:TeratomaNOS" - 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}, - { - "@id": "bts:Unknown" - } - ], - "sms:displayName": "Primary Diagnosis", - "sms:required": "sms:true", - "sms:validationRules": [] - }, - { - "@id": "bts:PriorMalignancy", - "@type": "rdfs:Class", - "rdfs:comment": "The yes/no/unknown indicator used to describe the patient's history of prior cancer diagnosis.", - "rdfs:label": "PriorMalignancy", - "rdfs:subClassOf": [ - { - "@id": "bts:Diagnosis" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:Yes" - }, - { - "@id": "bts:No" - }, - { - "@id": "bts:Unknown" - }, - { - "@id": "bts:NotReported" - }, - { - "@id": "bts:NotAllowedToCollect" - } - ], - "sms:displayName": "Prior Malignancy", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:PriorTreatment", - "@type": "rdfs:Class", - "rdfs:comment": "A yes/no/unknown/not applicable indicator related to the administration of therapeutic agents received before the body specimen was collected.", - "rdfs:label": "PriorTreatment", - "rdfs:subClassOf": [ - { - "@id": "bts:Diagnosis" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:Yes" - }, - { - "@id": "bts:No" - }, - { - "@id": "bts:Unknown" - }, - { - "@id": "bts:NotReported" - }, - { - "@id": "bts:NotAllowedToCollect" - } - ], - "sms:displayName": "Prior Treatment", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:SiteofResectionorBiopsy", - "@type": "rdfs:Class", - "rdfs:comment": "The text term used to describe the anatomic site of origin, of the patient's malignant disease, as described by the World Health Organization's (WHO) International Classification of Diseases for Oncology (ICD-O).", - "rdfs:label": "SiteofResectionorBiopsy", - "rdfs:subClassOf": [ - { - "@id": "bts:Diagnosis" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:AbdomenNOS" - }, - { - "@id": "bts:Abdominalesophagus" - }, - { - "@id": "bts:AccessorysinusNOS" - }, - { - "@id": "bts:Acousticnerve" - }, - { - "@id": "bts:AdrenalglandNOS" - }, - { - "@id": "bts:AmpullaofVater" - }, - { - "@id": "bts:Analcanal" - }, - { - "@id": "bts:Anterior2/3oftongueNOS" - }, - { - "@id": "bts:Anteriorfloorofmouth" - }, - { - "@id": "bts:Anteriormediastinum" - }, - { - "@id": "bts:Anteriorsurfaceofepiglottis" - }, - { - "@id": "bts:Anteriorwallofbladder" - }, - { - "@id": "bts:Anteriorwallofnasopharynx" - }, - { - "@id": "bts:AnusNOS" - }, - { - "@id": "bts:Aorticbodyandotherparaganglia" - }, - { - "@id": "bts:Appendix" - }, - { - "@id": "bts:Ascendingcolon" - }, - { - "@id": "bts:AutonomicnervoussystemNOS" - }, - { - "@id": "bts:Axillarytailofbreast" - }, - { - "@id": "bts:BaseoftongueNOS" - }, - { - "@id": "bts:Bladderneck" - }, - { - "@id": "bts:BladderNOS" - }, - { - "@id": "bts:Blood" - }, - { - "@id": "bts:Bodyofpancreas" - }, - { - "@id": "bts:Bodyofpenis" - }, - { - "@id": "bts:Bodyofstomach" - 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}, - { - "@id": "bts:Otherspecifiedpartsofmalegenitalorgans" - }, - { - "@id": "bts:Otherspecifiedpartsofpancreas" - }, - { - "@id": "bts:Ovary" - }, - { - "@id": "bts:Overlappinglesionofaccessorysinuses" - }, - { - "@id": "bts:Overlappinglesionofbladder" - }, - { - "@id": "bts:Overlappinglesionofbonesjointsandarticularcartilage" - }, - { - "@id": "bts:Overlappinglesionofbonesjointsandarticularcartilageoflimbs" - }, - { - "@id": "bts:Overlappinglesionofbrain" - }, - { - "@id": "bts:Overlappinglesionofbrainandcentralnervoussystem" - }, - { - "@id": "bts:Overlappinglesionofbreast" - }, - { - "@id": "bts:Overlappinglesionofcervixuteri" - }, - { - "@id": "bts:Overlappinglesionofcolon" - }, - { - "@id": "bts:Overlappinglesionofconnectivesubcutaneousandothersofttissues" - }, - { - "@id": "bts:Overlappinglesionofcorpusuteri" - }, - { - "@id": "bts:Overlappinglesionofdigestivesystem" - }, - { - "@id": "bts:Overlappinglesionofendocrineglandsandrelatedstructures" - }, - { - "@id": "bts:Overlappinglesionofesophagus" - 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}, - { - "@id": "bts:Overlappinglesionofrectumanusandanalcanal" - }, - { - "@id": "bts:Overlappinglesionofrespiratorysystemandintrathoracicorgans" - }, - { - "@id": "bts:Overlappinglesionofretroperitoneumandperitoneum" - }, - { - "@id": "bts:Overlappinglesionofskin" - }, - { - "@id": "bts:Overlappinglesionofsmallintestine" - }, - { - "@id": "bts:Overlappinglesionofstomach" - }, - { - "@id": "bts:Overlappinglesionoftongue" - }, - { - "@id": "bts:Overlappinglesionoftonsil" - }, - { - "@id": "bts:Overlappinglesionofurinaryorgans" - }, - { - "@id": "bts:Overlappinglesionofvulva" - }, - { - "@id": "bts:Overlappinglesionsoforopharynx" - }, - { - "@id": "bts:PalateNOS" - }, - { - "@id": "bts:PancreasNOS" - }, - { - "@id": "bts:Pancreaticduct" - }, - { - "@id": "bts:Parametrium" - }, - { - "@id": "bts:Paraspinal" - }, - { - "@id": "bts:Parathyroidgland" - }, - { - "@id": "bts:Paraurethralgland" - }, - { - "@id": "bts:Parietallobe" - }, - { - "@id": "bts:Parotidgland" - }, - { - "@id": "bts:Pelvicbonessacrumcoccyxandassociatedjoints" - }, - { - "@id": "bts:Pelviclymphnodes" - }, - { - "@id": "bts:PelvisNOS" - }, - { - "@id": "bts:PenisNOS" - }, - { - "@id": "bts:Peripheralnervesandautonomicnervoussystemofabdomen" - }, - { - "@id": "bts:Peripheralnervesandautonomicnervoussystemofheadfaceandneck" - }, - { - "@id": "bts:Peripheralnervesandautonomicnervoussystemoflowerlimbandhip" - }, - { - "@id": "bts:Peripheralnervesandautonomicnervoussystemofpelvis" - }, - { - "@id": "bts:Peripheralnervesandautonomicnervoussystemofthorax" - }, - { - "@id": "bts:PeripheralnervesandautonomicnervoussystemoftrunkNOS" - }, - { - "@id": "bts:Peripheralnervesandautonomicnervoussystemofupperlimbandshoulder" - }, - { - "@id": "bts:PeritoneumNOS" - }, - { - "@id": "bts:PharynxNOS" - }, - { - "@id": "bts:Pinealgland" - }, - { - "@id": "bts:Pituitarygland" - }, - { - "@id": "bts:Placenta" - }, - { - "@id": "bts:PleuraNOS" - }, - { - "@id": "bts:Postcricoidregion" - }, - { - "@id": "bts:Posteriormediastinum" - }, - { - "@id": "bts:Posteriorwallofbladder" - 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}, - { - "@id": "bts:TongueNOS" - }, - { - "@id": "bts:TonsilNOS" - }, - { - "@id": "bts:Tonsillarfossa" - }, - { - "@id": "bts:Tonsillarpillar" - }, - { - "@id": "bts:Trachea" - }, - { - "@id": "bts:Transversecolon" - }, - { - "@id": "bts:Trigoneofbladder" - }, - { - "@id": "bts:Undescendedtestis" - }, - { - "@id": "bts:Unknownprimarysite" - }, - { - "@id": "bts:Uppergum" - }, - { - "@id": "bts:UpperlimbNOS" - }, - { - "@id": "bts:Upperlobelung" - }, - { - "@id": "bts:UpperrespiratorytractNOS" - }, - { - "@id": "bts:Upperthirdofesophagus" - }, - { - "@id": "bts:Upper-innerquadrantofbreast" - }, - { - "@id": "bts:Upper-outerquadrantofbreast" - }, - { - "@id": "bts:Urachus" - }, - { - "@id": "bts:Ureter" - }, - { - "@id": "bts:Uretericorifice" - }, - { - "@id": "bts:Urethra" - }, - { - "@id": "bts:UrinarysystemNOS" - }, - { - "@id": "bts:Uterineadnexa" - }, - { - "@id": "bts:UterusNOS" - }, - { - "@id": "bts:Uvula" - }, - { - "@id": "bts:VaginaNOS" - }, - { - "@id": "bts:Vallecula" - }, - 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"@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:AbdomenNOS" - }, - { - "@id": "bts:Abdominalesophagus" - }, - { - "@id": "bts:AccessorysinusNOS" - }, - { - "@id": "bts:Acousticnerve" - }, - { - "@id": "bts:AdrenalglandNOS" - }, - { - "@id": "bts:AmpullaofVater" - }, - { - "@id": "bts:Analcanal" - }, - { - "@id": "bts:Anterior2/3oftongueNOS" - }, - { - "@id": "bts:Anteriorfloorofmouth" - }, - { - "@id": "bts:Anteriormediastinum" - }, - { - "@id": "bts:Anteriorsurfaceofepiglottis" - }, - { - "@id": "bts:Anteriorwallofbladder" - }, - { - "@id": "bts:Anteriorwallofnasopharynx" - }, - { - "@id": "bts:AnusNOS" - }, - { - "@id": "bts:Aorticbodyandotherparaganglia" - }, - { - "@id": "bts:Appendix" - }, - { - "@id": "bts:Ascendingcolon" - }, - { - "@id": "bts:AutonomicnervoussystemNOS" - }, - { - "@id": "bts:Axillarytailofbreast" - }, - { - "@id": "bts:BaseoftongueNOS" - }, - { - "@id": "bts:Bladderneck" - }, - { - "@id": "bts:BladderNOS" - }, - { - "@id": "bts:Blood" - }, - { - "@id": "bts:Bodyofpancreas" - }, - { - "@id": "bts:Bodyofpenis" - }, - { - "@id": "bts:Bodyofstomach" - }, - { - "@id": "bts:Bonemarrow" - }, - { - "@id": "bts:BoneoflimbNOS" - }, - { - "@id": "bts:BoneNOS" - }, - { - "@id": "bts:Bonesofskullandfaceandassociatedjoints" - }, - { - "@id": "bts:Borderoftongue" - }, - { - "@id": "bts:Brainstem" - }, - { - "@id": "bts:BrainNOS" - }, - { - "@id": "bts:Branchialcleft" - }, - { - "@id": "bts:BreastNOS" - }, - { - "@id": "bts:Broadligament" - }, - { - "@id": "bts:CardiaNOS" - }, - { - "@id": "bts:Carotidbody" - }, - { - "@id": "bts:Caudaequina" - }, - { - "@id": "bts:Cecum" - }, - { - "@id": "bts:Centralportionofbreast" - }, - { - "@id": "bts:CerebellumNOS" - }, - { - "@id": "bts:Cerebralmeninges" - }, - { - "@id": "bts:Cerebrum" - }, - { - "@id": "bts:Cervicalesophagus" - }, - { - "@id": "bts:Cervixuteri" - }, - { - "@id": "bts:Choroid" - }, - { - "@id": "bts:Ciliarybody" - }, - { - "@id": "bts:Cloacogeniczone" - }, - { - "@id": "bts:ColonNOS" - }, - { - "@id": "bts:Commissureoflip" - }, - { - "@id": "bts:Conjunctiva" - }, - { - "@id": "bts:Connectivesubcutaneousandothersofttissuesofabdomen" - }, - { - "@id": "bts:Connectivesubcutaneousandothersofttissuesofheadfaceandneck" - }, - { - "@id": "bts:Connectivesubcutaneousandothersofttissuesoflowerlimbandhip" - }, - { - "@id": "bts:Connectivesubcutaneousandothersofttissuesofpelvis" - }, - { - "@id": "bts:Connectivesubcutaneousandothersofttissuesofthorax" - }, - { - "@id": "bts:ConnectivesubcutaneousandothersofttissuesoftrunkNOS" - }, - { - "@id": "bts:Connectivesubcutaneousandothersofttissuesofupperlimbandshoulder" - }, - { - "@id": "bts:ConnectivesubcutaneousandothersofttissuesNOS" - }, - { - "@id": "bts:CorneaNOS" - }, - { - "@id": "bts:Corpusuteri" - }, - { - "@id": "bts:Cortexofadrenalgland" - }, - { - "@id": "bts:CranialnerveNOS" - }, - { - "@id": "bts:Craniopharyngealduct" - }, - { - "@id": "bts:Descendedtestis" - }, - { - "@id": "bts:Descendingcolon" - }, - { - "@id": "bts:Domeofbladder" - 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{ - "@id": "bts:Glanspenis" - }, - { - "@id": "bts:Glottis" - }, - { - "@id": "bts:GreatercurvatureofstomachNOS" - }, - { - "@id": "bts:GumNOS" - }, - { - "@id": "bts:Hardpalate" - }, - { - "@id": "bts:Headofpancreas" - }, - { - "@id": "bts:HeadfaceorneckNOS" - }, - { - "@id": "bts:Heart" - }, - { - "@id": "bts:HematopoieticsystemNOS" - }, - { - "@id": "bts:Hepaticflexureofcolon" - }, - { - "@id": "bts:Hypopharyngealaspectofaryepiglotticfold" - }, - { - "@id": "bts:HypopharynxNOS" - }, - { - "@id": "bts:Ileum" - }, - { - "@id": "bts:Ill-definedsiteswithinrespiratorysystem" - }, - { - "@id": "bts:IntestinaltractNOS" - }, - { - "@id": "bts:Intra-abdominallymphnodes" - }, - { - "@id": "bts:Intrahepaticbileduct" - }, - { - "@id": "bts:Intrathoraciclymphnodes" - }, - { - "@id": "bts:IsletsofLangerhans" - }, - { - "@id": "bts:Isthmusuteri" - }, - { - "@id": "bts:Jejunum" - }, - { - "@id": "bts:KidneyNOS" - }, - { - "@id": "bts:Labiummajus" - }, - { - "@id": "bts:Labiumminus" - }, - { - "@id": "bts:Lacrimalgland" - 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}, - { - "@id": "bts:Lymphnodesofmultipleregions" - }, - { - "@id": "bts:Mainbronchus" - }, - { - "@id": "bts:MajorsalivaryglandNOS" - }, - { - "@id": "bts:MalegenitalorgansNOS" - }, - { - "@id": "bts:Mandible" - }, - { - "@id": "bts:Maxillarysinus" - }, - { - "@id": "bts:Meckeldiverticulum" - }, - { - "@id": "bts:MediastinumNOS" - }, - { - "@id": "bts:Medullaofadrenalgland" - }, - { - "@id": "bts:MeningesNOS" - }, - { - "@id": "bts:Middleear" - }, - { - "@id": "bts:Middlelobelung" - }, - { - "@id": "bts:Middlethirdofesophagus" - }, - { - "@id": "bts:MouthNOS" - }, - { - "@id": "bts:MucosaoflipNOS" - }, - { - "@id": "bts:Mucosaoflowerlip" - }, - { - "@id": "bts:Mucosaofupperlip" - }, - { - "@id": "bts:Myometrium" - }, - { - "@id": "bts:Nasalcavity" - }, - { - "@id": "bts:NasopharynxNOS" - }, - { - "@id": "bts:NervoussystemNOS" - }, - { - "@id": "bts:Nipple" - }, - { - "@id": "bts:Occipitallobe" - }, - { - "@id": "bts:Olfactorynerve" - }, - { - "@id": "bts:Opticnerve" - }, - { - "@id": "bts:OrbitNOS" - }, - { - "@id": "bts:OropharynxNOS" - }, - { - "@id": "bts:Otherill-definedsites" - }, - { - "@id": "bts:Otherspecifiedpartsoffemalegenitalorgans" - }, - { - "@id": "bts:Otherspecifiedpartsofmalegenitalorgans" - }, - { - "@id": "bts:Otherspecifiedpartsofpancreas" - }, - { - "@id": "bts:Ovary" - }, - { - "@id": "bts:Overlappinglesionofaccessorysinuses" - }, - { - "@id": "bts:Overlappinglesionofbladder" - }, - { - "@id": "bts:Overlappinglesionofbonesjointsandarticularcartilage" - }, - { - "@id": "bts:Overlappinglesionofbonesjointsandarticularcartilageoflimbs" - }, - { - "@id": "bts:Overlappinglesionofbrain" - }, - { - "@id": "bts:Overlappinglesionofbrainandcentralnervoussystem" - }, - { - "@id": "bts:Overlappinglesionofbreast" - }, - { - "@id": "bts:Overlappinglesionofcervixuteri" - }, - { - "@id": "bts:Overlappinglesionofcolon" - }, - { - "@id": "bts:Overlappinglesionofconnectivesubcutaneousandothersofttissues" - }, - { - "@id": "bts:Overlappinglesionofcorpusuteri" - }, - { - "@id": "bts:Overlappinglesionofdigestivesystem" - }, - { - "@id": "bts:Overlappinglesionofendocrineglandsandrelatedstructures" - }, - { - "@id": "bts:Overlappinglesionofesophagus" - }, - { - "@id": "bts:Overlappinglesionofeyeandadnexa" - }, - { - "@id": "bts:Overlappinglesionoffemalegenitalorgans" - }, - { - "@id": "bts:Overlappinglesionoffloorofmouth" - }, - { - "@id": "bts:Overlappinglesionofheartmediastinumandpleura" - }, - { - "@id": "bts:Overlappinglesionofhypopharynx" - }, - { - "@id": "bts:Overlappinglesionofill-definedsites" - }, - { - "@id": "bts:Overlappinglesionoflarynx" - }, - { - "@id": "bts:Overlappinglesionoflip" - }, - { - "@id": "bts:Overlappinglesionofliporalcavityandpharynx" - }, - { - "@id": "bts:Overlappinglesionoflung" - }, - { - "@id": "bts:Overlappinglesionofmajorsalivaryglands" - }, - { - "@id": "bts:Overlappinglesionofmalegenitalorgans" - }, - { - "@id": "bts:Overlappinglesionofnasopharynx" - }, - { - "@id": "bts:Overlappinglesionofotherandunspecifiedpartsofmouth" - }, - { - "@id": "bts:Overlappinglesionofpalate" - }, - { - "@id": "bts:Overlappinglesionofpancreas" - }, - { - "@id": "bts:Overlappinglesionofpenis" - }, - { - "@id": "bts:Overlappinglesionofperipheralnervesandautonomicnervoussystem" - }, - { - "@id": "bts:Overlappinglesionofrectumanusandanalcanal" - }, - { - "@id": "bts:Overlappinglesionofrespiratorysystemandintrathoracicorgans" - }, - { - "@id": "bts:Overlappinglesionofretroperitoneumandperitoneum" - }, - { - "@id": "bts:Overlappinglesionofskin" - }, - { - "@id": "bts:Overlappinglesionofsmallintestine" - }, - { - "@id": "bts:Overlappinglesionofstomach" - }, - { - "@id": "bts:Overlappinglesionoftongue" - }, - { - "@id": "bts:Overlappinglesionoftonsil" - }, - { - "@id": "bts:Overlappinglesionofurinaryorgans" - }, - { - "@id": "bts:Overlappinglesionofvulva" - }, - { - "@id": "bts:Overlappinglesionsoforopharynx" - }, - { - "@id": "bts:PalateNOS" - }, - { - "@id": "bts:PancreasNOS" - }, - { - "@id": "bts:Pancreaticduct" - }, - { - "@id": "bts:Parametrium" - }, - { - "@id": "bts:Paraspinal" - }, - { - "@id": "bts:Parathyroidgland" - }, - { - "@id": "bts:Paraurethralgland" - }, - { - "@id": "bts:Parietallobe" - }, - { - "@id": "bts:Parotidgland" - }, - { - "@id": "bts:Pelvicbonessacrumcoccyxandassociatedjoints" - }, - { - "@id": "bts:Pelviclymphnodes" - }, - { - "@id": "bts:PelvisNOS" - }, - { - "@id": "bts:PenisNOS" - }, - { - "@id": "bts:Peripheralnervesandautonomicnervoussystemofabdomen" - }, - { - "@id": "bts:Peripheralnervesandautonomicnervoussystemofheadfaceandneck" - }, - { - "@id": "bts:Peripheralnervesandautonomicnervoussystemoflowerlimbandhip" - }, - { - "@id": "bts:Peripheralnervesandautonomicnervoussystemofpelvis" - }, - { - "@id": "bts:Peripheralnervesandautonomicnervoussystemofthorax" - }, - { - "@id": "bts:PeripheralnervesandautonomicnervoussystemoftrunkNOS" - }, - { - "@id": "bts:Peripheralnervesandautonomicnervoussystemofupperlimbandshoulder" - }, - { - "@id": "bts:PeritoneumNOS" - }, - { - "@id": "bts:PharynxNOS" - }, - { - "@id": "bts:Pinealgland" - }, - { - "@id": "bts:Pituitarygland" - }, - { - "@id": "bts:Placenta" - }, - { - "@id": "bts:PleuraNOS" - }, - { - "@id": "bts:Postcricoidregion" - }, - { - "@id": "bts:Posteriormediastinum" - }, - { - "@id": "bts:Posteriorwallofbladder" - }, - { - "@id": "bts:Posteriorwallofhypopharynx" - }, - { - "@id": "bts:Posteriorwallofnasopharynx" - }, - { - "@id": "bts:Posteriorwalloforopharynx" - }, - { - "@id": "bts:Prepuce" - }, - { - "@id": "bts:Prostategland" - }, - { - "@id": "bts:Pylorus" - }, - { - "@id": "bts:Pyriformsinus" - }, - { - "@id": "bts:Rectosigmoidjunction" - }, - { - "@id": "bts:RectumNOS" - }, - { - "@id": "bts:Renalpelvis" - }, - { - "@id": "bts:ReticuloendothelialsystemNOS" - }, - { - "@id": "bts:Retina" - }, - { - "@id": "bts:Retromolararea" - }, - { - "@id": "bts:Retroperitoneum" - }, - { - "@id": "bts:Ribsternumclavicleandassociatedjoints" - }, - { - "@id": "bts:Roundligament" - }, - { - "@id": "bts:ScrotumNOS" - }, - { - "@id": "bts:Shortbonesoflowerlimbandassociatedjoints" - }, - { - "@id": "bts:Shortbonesofupperlimbandassociatedjoints" - }, - { - "@id": "bts:Sigmoidcolon" - }, - { - "@id": "bts:SkinoflipNOS" - }, - { - "@id": "bts:Skinoflowerlimbandhip" - }, - { - "@id": "bts:Skinofotherandunspecifiedpartsofface" - }, - { - "@id": "bts:Skinofscalpandneck" - }, - { - "@id": "bts:Skinoftrunk" - }, - { - "@id": "bts:Skinofupperlimbandshoulder" - }, - { - "@id": "bts:SkinNOS" - }, - { - "@id": "bts:SmallintestineNOS" - }, - { - "@id": "bts:SoftpalateNOS" - }, - { - "@id": "bts:Specifiedpartsofperitoneum" - }, - { - "@id": "bts:Spermaticcord" - }, - { - "@id": "bts:Sphenoidsinus" - }, - { - "@id": "bts:Spinalcord" - }, - { - "@id": "bts:Spinalmeninges" - }, - { - "@id": "bts:Spleen" - }, - { - "@id": "bts:Splenicflexureofcolon" - }, - { - "@id": "bts:StomachNOS" - }, - { - "@id": "bts:Subglottis" - }, - { - "@id": "bts:Sublingualgland" - }, - { - "@id": "bts:Submandibulargland" - }, - { - "@id": "bts:Superiorwallofnasopharynx" - }, - { - "@id": "bts:Supraglottis" - }, - { - "@id": "bts:Tailofpancreas" - }, - { - "@id": "bts:Temporallobe" - }, - { - "@id": "bts:TestisNOS" - }, - { - "@id": "bts:Thoracicesophagus" - }, - { - "@id": "bts:ThoraxNOS" - }, - { - "@id": "bts:Thymus" - }, - { - "@id": "bts:Thyroidgland" - }, - { - "@id": "bts:TongueNOS" - }, - { - "@id": "bts:TonsilNOS" - }, - { - "@id": "bts:Tonsillarfossa" - }, - { - "@id": "bts:Tonsillarpillar" - }, - { - "@id": "bts:Trachea" - }, - { - "@id": "bts:Transversecolon" - }, - { - "@id": "bts:Trigoneofbladder" - }, - { - "@id": "bts:Undescendedtestis" - }, - { - "@id": "bts:Unknownprimarysite" - }, - { - "@id": "bts:Uppergum" - }, - { - "@id": "bts:UpperlimbNOS" - }, - { - "@id": "bts:Upperlobelung" - }, - { - "@id": "bts:UpperrespiratorytractNOS" - }, - { - "@id": "bts:Upperthirdofesophagus" - }, - { - "@id": "bts:Upper-innerquadrantofbreast" - }, - { - "@id": "bts:Upper-outerquadrantofbreast" - }, - { - "@id": "bts:Urachus" - }, - { - "@id": "bts:Ureter" - }, - { - "@id": "bts:Uretericorifice" - 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}, - { - "@id": "bts:TobaccoUseperDay", - "@type": "rdfs:Class", - "rdfs:comment": "Numeric value that represents the number of times the patient uses tobacco each day.", - "rdfs:label": "TobaccoUseperDay", - "rdfs:subClassOf": [ - { - "@id": "bts:Exposure" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Tobacco Use per Day", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:TobaccoSmokingStatus", - "@type": "rdfs:Class", - "rdfs:comment": "Category describing current smoking status and smoking history as self-reported by a patient", - "rdfs:label": "TobaccoSmokingStatus", - "rdfs:subClassOf": [ - { - "@id": "bts:Exposure" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:LifelongNon-Smoker" - }, - { - "@id": "bts:CurrentSmoker" - }, - { - "@id": "bts:CurrentReformedSmokerfor>15yrs" - }, - { - "@id": "bts:CurrentReformedSmokerfor15yrs", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "CurrentReformedSmokerfor>15yrs", - "rdfs:subClassOf": [ - { - "@id": "bts:TobaccoSmokingStatus" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Current Reformed Smoker for > 15 yrs", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:CurrentReformedSmokerfor= 1", + "rdfs:label" : "SizeC", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "SizeC", + "sms:required" : "sms:false" + }, { + "@id" : "bts:SpecializedMolecularTest", + "@type" : "rdfs:Class", + "rdfs:comment" : "Text term used to describe a specific test that is not covered in the list of molecular analysis methods. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", + "rdfs:label" : "SpecializedMolecularTest", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "SpecializedMolecularTest", + "sms:required" : "sms:false" + }, { + "@id" : "bts:Locus", + "@type" : "rdfs:Class", + "rdfs:comment" : "Alphanumeric value used to describe the locus of a specific genetic variant. Example: NM_001126114.", + "rdfs:label" : "Locus", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "Locus", + "sms:required" : "sms:false" + }, { + "@id" : "bts:PlaneCount", + "@type" : "rdfs:Class", + "rdfs:comment" : "Number of Z-planes (not to be confused with downsampled \"\"pyramid\"\"). Integer >=1", + "rdfs:label" : "PlaneCount", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "PlaneCount", + "sms:required" : "sms:false" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:DissociationMethod", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:NotApplicable" + }, { + "@id" : "bts:gentleMACS" + }, { + "@id" : "bts:Dounce" + }, { + "@id" : "bts:EnzymaticDigestion" + } ], + "rdfs:label" : "DissociationMethod", + "rdfs:comment" : "The tissue dissociation method used for scRNASeq or scATAC-seq assays", + "@type" : "rdfs:Class", + "sms:displayName" : "DissociationMethod" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:PRStainingIntensity", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:Other" + }, { + "@id" : "bts:unknown" + }, { + "@id" : "bts:Strong" + }, { + "@id" : "bts:Moderate" + }, { + "@id" : "bts:Weak" + }, { + "@id" : "bts:Weak-Moderate" + }, { + "@id" : "bts:Moderate-Strong" + }, { + "@id" : "bts:Weak-Strong" + } ], + "rdfs:label" : "PRStainingIntensity", + "rdfs:comment" : "Text term to indicate the PR staining intensity on pathology assessment in a participant with breast cancer", + "@type" : "rdfs:Class", + "sms:displayName" : "PRStainingIntensity" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:BreastCarcinomaSurgicalProcedureName", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:Radicalmastectomy" + }, { + "@id" : "bts:unknown" + }, { + "@id" : "bts:Simplemastectomy" + }, { + "@id" : "bts:Modifiedradicalmastectomy" + }, { + "@id" : "bts:Partialmastectomy" + }, { + "@id" : "bts:Surgerynotperformed" + }, { + "@id" : "bts:Other" + }, { + "@id" : "bts:Lumpectomy" + }, { + "@id" : "bts:Re-excision" + } ], + "rdfs:label" : "BreastCarcinomaSurgicalProcedureName", + "rdfs:comment" : "Text name of a surgical procedure performed for a person with a diagnosis of breast cancer", + "@type" : "rdfs:Class", + "sms:displayName" : "BreastCarcinomaSurgicalProcedureName" + }, { + "@id" : "bts:BreastCarcinomaERStatusPercentageValue", + "@type" : "rdfs:Class", + "rdfs:comment" : "A numerical quantity measured or assigned or computed which captures the estrogen receptor level measured in a participant with breast cancer", + "rdfs:label" : "BreastCarcinomaERStatusPercentageValue", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "BreastCarcinomaERStatusPercentageValue", + "sms:required" : "sms:false" + }, { + "@id" : "bts:BreastCarcinomaPRStatusPercentageValue", + "@type" : "rdfs:Class", + "rdfs:comment" : "A numerical quantity measured or assigned or computed which captures the progesterone receptor level measured in a participant with breast cancer", + "rdfs:label" : "BreastCarcinomaPRStatusPercentageValue", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "BreastCarcinomaPRStatusPercentageValue", + "sms:required" : "sms:false" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:TobaccoSmokingStatus", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:NotReported" + }, { + "@id" : "bts:unknown" + }, { + "@id" : "bts:CurrentReformedSmoker" + }, { + "@id" : "bts:CurrentSmoker" + }, { + "@id" : "bts:CurrentReformedSmokerfor>15yrs" + }, { + "@id" : "bts:DurationNotSpecified" + }, { + "@id" : "bts:Smokinghistorynotdocumented" + }, { + "@id" : "bts:LifelongNon-Smoker" + }, { + "@id" : "bts:CurrentReformedSmokerfor= 1", + "rdfs:label" : "SizeX", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "SizeX", + "sms:required" : "sms:false" + }, { + "@id" : "bts:GenomeAnnotationURL", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "GenomeAnnotationURL", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "GenomeAnnotationURL", + "sms:required" : "sms:false" + }, { + "@id" : "bts:OligoBarcodeLowerStrand", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "OligoBarcodeLowerStrand", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "OligoBarcodeLowerStrand", + "sms:required" : "sms:false" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:Read2", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:CellBarcodeandDNAInsert" + }, { + "@id" : "bts:SampleIndexandDNAInsert" + }, { + "@id" : "bts:DNAInsert" + }, { + "@id" : "bts:SampleIndex" + }, { + "@id" : "bts:CellBarcode" + } ], + "rdfs:label" : "Read2", + "rdfs:comment" : "Read 2 content description", + "@type" : "rdfs:Class", + "sms:displayName" : "Read2" + }, { + "@id" : "bts:TotalReads", + "@type" : "rdfs:Class", + "rdfs:comment" : "Total number of reads per sample. Integer", + "rdfs:label" : "TotalReads", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "TotalReads", + "sms:required" : "sms:false" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:HistoneVariant", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:mH2A" + }, { + "@id" : "bts:mH2A.1" + }, { + "@id" : "bts:NotReported" + }, { + "@id" : "bts:H2A.Z" + }, { + "@id" : "bts:H3.2" + }, { + "@id" : "bts:unknown" + }, { + "@id" : "bts:H3t(H3.4)" + }, { + "@id" : "bts:H3.X" + }, { + "@id" : "bts:H2A.Z.2.2" + }, { + "@id" : "bts:H3.Y" + }, { + "@id" : "bts:H3.5" + }, { + "@id" : "bts:H3.3" + }, { + "@id" : "bts:H3.1" + }, { + "@id" : "bts:H2A-Bbd" + }, { + "@id" : "bts:mH2A.2" + }, { + "@id" : "bts:CENP-A" + }, { + "@id" : "bts:H2A.Z.2" + }, { + "@id" : "bts:H2A.X" + }, { + "@id" : "bts:H2A.Z.1" + } ], + "rdfs:label" : "HistoneVariant", + "rdfs:comment" : "The text term used to describe a specific histone variants, which are proteins that substitute for the core canonical histones.", + "@type" : "rdfs:Class", + "sms:displayName" : "HistoneVariant" + }, { + "@id" : "bts:Chewingtobaccodailyusecount", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "Chewingtobaccodailyusecount", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "Chewingtobaccodailyusecount", + "sms:required" : "sms:false" + }, { + "@id" : "bts:SecondGeneSymbol", + "@type" : "rdfs:Class", + "rdfs:comment" : "The text term used to describe a secondary gene targeted or included in molecular analysis. For rearrangements, this is should represent the location of the variant. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", + "rdfs:label" : "SecondGeneSymbol", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "SecondGeneSymbol", + "sms:required" : "sms:false" + }, { + "@id" : "bts:CycleNumber", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "CycleNumber", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "CycleNumber", + "sms:required" : "sms:false" + }, { + "@id" : "bts:GeneSymbol", + "@type" : "rdfs:Class", + "rdfs:comment" : "The text term used to describe a gene targeted or included in molecular analysis. For rearrangements, this is should be used to represent the reference gene. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", + "rdfs:label" : "GeneSymbol", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "GeneSymbol", + "sms:required" : "sms:false" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:GenomicCoverageType", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:true", + "schema:rangeIncludes" : [ { + "@id" : "bts:WholeGenome" + }, { + "@id" : "bts:TargetedGenome" + }, { + "@id" : "bts:BeadchipArray" + } ], + "rdfs:label" : "GenomicCoverageType", + "rdfs:comment" : "Genomic coverage", + "@type" : "rdfs:Class", + "sms:displayName" : "GenomicCoverageType" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:PixelType", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:int32" + }, { + "@id" : "bts:int16" + }, { + "@id" : "bts:double" + }, { + "@id" : "bts:float" + }, { + "@id" : "bts:uint16" + }, { + "@id" : "bts:int8" + }, { + "@id" : "bts:uint32" + }, { + "@id" : "bts:bit" + }, { + "@id" : "bts:uint8" + } ], + "rdfs:label" : "PixelType", + "rdfs:comment" : "Data type for each pixel value. E.g. \"\"uint16\"\"", + "@type" : "rdfs:Class", + "sms:displayName" : "PixelType" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:VitalStatus", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:Dead" + }, { + "@id" : "bts:unknown" + }, { + "@id" : "bts:NotReported" + }, { + "@id" : "bts:Alive" + } ], + "rdfs:label" : "VitalStatus", + "rdfs:comment" : "The survival state of the person registered on the protocol.", + "@type" : "rdfs:Class", + "sms:displayName" : "VitalStatus" + }, { + "@id" : "bts:ParentID", + "@type" : "rdfs:Class", + "rdfs:comment" : " ID of parent biospecimen", + "rdfs:label" : "ParentID", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "ParentID", + "sms:required" : "sms:false" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:FileFormat", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:dat" + }, { + "@id" : "bts:Rscript" + }, { + "@id" : "bts:tif" + }, { + "@id" : "bts:bam" + }, { + "@id" : "bts:M" + }, { + "@id" : "bts:7z" + }, { + "@id" : "bts:csv" + }, { + "@id" : "bts:png" + }, { + "@id" : "bts:tar" + }, { + "@id" : "bts:bai" + }, { + "@id" : "bts:OME-TIFF" + }, { + "@id" : "bts:dup" + }, { + "@id" : "bts:hic" + }, { + "@id" : "bts:cellam" + }, { + "@id" : "bts:idat" + }, { + "@id" : "bts:txt" + }, { + "@id" : "bts:raw" + }, { + "@id" : "bts:hdf5" + }, { + "@id" : "bts:bgzip" + }, { + "@id" : "bts:seg" + }, { + "@id" : "bts:rmd" + }, { + "@id" : "bts:scn" + }, { + "@id" : "bts:vcf" + }, { + "@id" : "bts:maf" + }, { + "@id" : "bts:tsv" + }, { + "@id" : "bts:pdf" + }, { + "@id" : "bts:sam" + }, { + "@id" : "bts:bedgraph" + }, { + "@id" : "bts:sra" + }, { + "@id" : "bts:abf" + }, { + "@id" : "bts:fastq" + }, { + "@id" : "bts:pzfx" + }, { + "@id" : "bts:bednarrowPeak" + }, { + "@id" : "bts:fig" + }, { + "@id" : "bts:am" + }, { + "@id" : "bts:gct" + }, { + "@id" : "bts:tagAlign" + }, { + "@id" : "bts:gzip" + }, { + "@id" : "bts:gtf" + }, { + "@id" : "bts:DICOM" + }, { + "@id" : "bts:cloupe" + }, { + "@id" : "bts:czi" + }, { + "@id" : "bts:tiff" + }, { + "@id" : "bts:powerpoint" + }, { + "@id" : "bts:zip" + }, { + "@id" : "bts:bed" + }, { + "@id" : "bts:mex" + }, { + "@id" : "bts:ab1" + }, { + "@id" : "bts:Pythonscript" + }, { + "@id" : "bts:msf" + }, { + "@id" : "bts:mzML" + }, { + "@id" : "bts:svg" + }, { + "@id" : "bts:cel" + }, { + "@id" : "bts:mtx" + }, { + "@id" : "bts:bigwig" + }, { + "@id" : "bts:chp" + }, { + "@id" : "bts:svs" + }, { + "@id" : "bts:wiggle" + }, { + "@id" : "bts:mov" + }, { + "@id" : "bts:bcf" + }, { + "@id" : "bts:hyperlink" + }, { + "@id" : "bts:sdf" + }, { + "@id" : "bts:recal" + }, { + "@id" : "bts:idx" + }, { + "@id" : "bts:sif" + }, { + "@id" : "bts:json" + }, { + "@id" : "bts:avi" + }, { + "@id" : "bts:HEIC" + }, { + "@id" : "bts:gff3" + }, { + "@id" : "bts:bpm" + }, { + "@id" : "bts:bedbroadPeak" + }, { + "@id" : "bts:excel" + }, { + "@id" : "bts:flagstat" + }, { + "@id" : "bts:mpg" + }, { + "@id" : "bts:RData" + }, { + "@id" : "bts:Sentrixdescriptorfile" + }, { + "@id" : "bts:jpg" + }, { + "@id" : "bts:doc" + }, { + "@id" : "bts:bedgappedPeak" + }, { + "@id" : "bts:xml" + }, { + "@id" : "bts:sqlite" + }, { + "@id" : "bts:tranches" + }, { + "@id" : "bts:plink" + }, { + "@id" : "bts:sav" + }, { + "@id" : "bts:locs" + }, { + "@id" : "bts:html" + }, { + "@id" : "bts:md" + }, { + "@id" : "bts:fasta" + } ], + "rdfs:label" : "FileFormat", + "rdfs:comment" : "Format of a file (e.g. txt, csv, fastq, bam, etc.)", + "@type" : "rdfs:Class", + "sms:displayName" : "FileFormat" + }, { + "@id" : "bts:LinkedMatrices", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "LinkedMatrices", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "LinkedMatrices", + "sms:required" : "sms:false" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:AlcoholExposure", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:Yes-AlcoholExposure" + }, { + "@id" : "bts:NotReported" + }, { + "@id" : "bts:No-AlcoholExposure" + } ], + "rdfs:label" : "AlcoholExposure", + "rdfs:comment" : "Indicate if individual has alcohol exposure", + "@type" : "rdfs:Class", + "sms:displayName" : "AlcoholExposure" + }, { + "@id" : "bts:ScRNAseqWorkflowParametersDescription", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "ScRNAseqWorkflowParametersDescription", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "ScRNAseqWorkflowParametersDescription", + "sms:required" : "sms:false" + }, { + "@id" : "bts:ExcitationBandwidth", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + 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Integer >= 1", + "rdfs:label" : "SizeT", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "SizeT", + "sms:required" : "sms:false" + }, { + "@id" : "bts:Intron", + "@type" : "rdfs:Class", + "rdfs:comment" : "Intron number targeted or included in molecular analysis. If a specific genetic variant is being reported, this property can be used to capture the intron where that variant is located.", + "rdfs:label" : "Intron", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "Intron", + "sms:required" : "sms:false" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:BreastCancerGenomicTestPerformed", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:Other" + }, { + "@id" : "bts:unknown" + }, { + "@id" : "bts:Datanotavailable" + }, { + "@id" : "bts:Oncotype" + }, { + "@id" : "bts:MammaPrint" + }, { + "@id" : "bts:Notperformed" + } ], + "rdfs:label" : "BreastCancerGenomicTestPerformed", + "rdfs:comment" : "Text term that represents the name of the genomic test performed for breast cancer.", + "@type" : "rdfs:Class", + "sms:displayName" : "BreastCancerGenomicTestPerformed" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:EnvironmentalTobaccoSmokeExposure", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:Yes" + }, { + "@id" : "bts:No" + }, { + "@id" : "bts:unknown" + } ], + "rdfs:label" : "EnvironmentalTobaccoSmokeExposure", + "rdfs:comment" : "The yes/no/unknown indicator used to describe whether a patient was exposed to smoke that is emitted from burning tobacco, including cigarettes, pipes, and cigars. This includes tobacco smoke exhaled by smokers.", + "@type" : "rdfs:Class", + "sms:displayName" : "EnvironmentalTobaccoSmokeExposure" + }, { + "@id" : "bts:ProtocolLink", + "@type" : "rdfs:Class", + "rdfs:comment" : "URL to a free/open protocol resource describing the assay protocol (e.g. surface markers used in Smart-seq, dissociation duration, lot/batch numbers for key reagents such as primers, sequencing reagent kits, etc.) or the protocol by which the sample was obtained or generated.", + "rdfs:label" : "ProtocolLink", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "ProtocolLink", + "sms:required" : "sms:false" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:RelativewithCancerHistory", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:Yes-CancerHistoryRelative" + }, { + "@id" : "bts:unknown" + }, { + "@id" : "bts:NotReported" + }, { + "@id" : "bts:None" + } ], + "rdfs:label" : "RelativewithCancerHistory", + "rdfs:comment" : "The yes/no/unknown indicator used to describe whether any of the patient's relatives have a history of cancer.", + "@type" : "rdfs:Class", + "sms:displayName" : "RelativewithCancerHistory" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:PrecancerousConditionType", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:CarcinomaNOS" + }, { + "@id" : "bts:Atypicalmelanocyticproliferation" + }, { + "@id" : "bts:Superficialspreading" + }, { + "@id" : "bts:Melanomainsituarisinginagiantcongenitalnevus" + }, { + "@id" : "bts:Invasivemelanoma" + }, { + "@id" : "bts:Invasivemelanoma-acrallentiginous" + }, { + "@id" : "bts:Melanomainsitunototherwiseclassified" + }, { + "@id" : "bts:Milddysplasia" + }, { + "@id" : "bts:Adenocarcinomainsitu-nonmucinous" + }, { + "@id" : "bts:Reservecellhyperplasia" + }, { + "@id" : "bts:Invasivemelanoma-nevoid" + }, { + "@id" : "bts:Nodiagnosispossible" + }, { + "@id" : "bts:Hamartoma" + }, { + "@id" : "bts:Adenocarcinomainsitu-mucinous" + }, { + "@id" : "bts:Squamousmetaplasia-immature" + }, { + "@id" : "bts:Severedysplasia" + }, { + "@id" : "bts:Invasivemelanoma-lentigomaligna" + }, { + "@id" : "bts:Squamousmetaplasia-mature" + }, { + "@id" : "bts:Acral-lentiginous" + }, { + "@id" : "bts:Invasivemelanoma-superficialspreading" + }, { + "@id" : "bts:Atypicaladenomatoushyperplasia" + }, { + "@id" : "bts:Moderatedysplasia" + }, { + "@id" : "bts:AtypicalAdenomatousLungHyperplasia" + }, { + "@id" : "bts:NormalWDA" + }, { + "@id" : "bts:Other" + }, { + "@id" : "bts:Persistentmelanomainsitu" + }, { + "@id" : "bts:PancreaticIntraepithelialNeoplasia" + }, { + "@id" : "bts:DuctalCarcinomaInSitu" + }, { + "@id" : "bts:PancreaticIntraductalPapillary-MucinousNeoplasm" + }, { + "@id" : "bts:Melanocytichyperplasia" + }, { + "@id" : "bts:Melanomainsitu" + }, { + "@id" : "bts:Invasivemelanoma-desmoplastic" + }, { + "@id" : "bts:BenigntumorNOS" + }, { + "@id" : "bts:Lentigomalignatype" + }, { + "@id" : "bts:Scar-noresidualmelanoma" + }, { + "@id" : "bts:Invasivemelanoma-nodulartype" + }, { + "@id" : "bts:ProstaticIntraepithelialNeoplasia" + } ], + "rdfs:label" : "PrecancerousConditionType", + "rdfs:comment" : "The classification of pre-cancerous cells found in a specific collection of data being studied by the Consortium for Molecular and Cellular Characterization of Screen-Detected Lesions (MCL).", + "@type" : "rdfs:Class", + "sms:displayName" : "PrecancerousConditionType" + }, { + "@id" : "bts:CellBarcodeOffset", + "@type" : "rdfs:Class", + "rdfs:comment" : "Offset in sequence for cell barcode read (in bp): number", + "rdfs:label" : "CellBarcodeOffset", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "CellBarcodeOffset", + "sms:required" : "sms:false" + }, { + "@id" : "bts:UMIBarcodeLength", + "@type" : "rdfs:Class", + "rdfs:comment" : "Length of UMI barcode read (in bp): number", + "rdfs:label" : "UMIBarcodeLength", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "UMIBarcodeLength", + "sms:required" : "sms:false" + }, { + "@id" : "bts:IschemicTime", + "@type" : "rdfs:Class", + "rdfs:comment" : "Duration of time, in seconds, between when the specimen stopped receiving oxygen and when it was preserved or processed. 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Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", + "@type" : "rdfs:Class", + "sms:displayName" : "MismatchRepairMutation" + }, { + "@id" : "bts:Filename", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "Filename", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "Filename", + "sms:required" : "sms:false" + }, { + "@id" : "bts:CountryofBirth", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "CountryofBirth", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "CountryofBirth", + "sms:required" : "sms:false" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:LibraryConstructionMethod", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:10xV3" + }, { + "@id" : "bts:inDropsV2" + }, { + "@id" : "bts:10xV1.1" + 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term used to describe the type of genetic variation.", + "@type" : "rdfs:Class", + "sms:displayName" : "VariantType" + }, { + "@id" : "bts:CigarettesperDay", + "@type" : "rdfs:Class", + "rdfs:comment" : "The average number of cigarettes smoked per day.", + "rdfs:label" : "CigarettesperDay", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "CigarettesperDay", + "sms:required" : "sms:false" + }, { + "@id" : "bts:CellBarcodeTag", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "CellBarcodeTag", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "CellBarcodeTag", + "sms:required" : "sms:false" + }, { + "@id" : "bts:DaystoProgressionFree", + "@type" : "rdfs:Class", + "rdfs:comment" : "Number of days between the date used for index and the date the patient's disease was formally confirmed as progression-free.", + "rdfs:label" : "DaystoProgressionFree", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "DaystoProgressionFree", + "sms:required" : "sms:false" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:MultifocalBreastCarcinomaPresentIndicator", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:Yes" + }, { + "@id" : "bts:No" + }, { + "@id" : "bts:unknown" + } ], + "rdfs:label" : "MultifocalBreastCarcinomaPresentIndicator", + "rdfs:comment" : "A response to indicate if there is breast cancer characterized by the presence of multiple cancerous tumors that originate from the same clone and usually located in the same quadrant of the breast.", + "@type" : "rdfs:Class", + "sms:displayName" : "MultifocalBreastCarcinomaPresentIndicator" + }, { + "@id" : "bts:BiospecimenID", + "@type" : "rdfs:Class", + "rdfs:comment" : " Alias for Sample ID", + "rdfs:label" : "BiospecimenID", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "BiospecimenID", + "sms:required" : "sms:false" + }, { + "@id" : "bts:BloodTestNormalRangeLower", + "@type" : "rdfs:Class", + "rdfs:comment" : "Numeric value used to describe the lower limit of the normal range used to describe a healthy individual at the institution where the test was completed.", + "rdfs:label" : "BloodTestNormalRangeLower", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "BloodTestNormalRangeLower", + "sms:required" : "sms:false" + }, { + "@id" : "bts:RuralvsUrban", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "RuralvsUrban", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "RuralvsUrban", + "sms:required" : "sms:false" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:MulticentricBreastCarcinomaPresentIndicator", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:Yes" + }, { + "@id" : "bts:No" + }, { + "@id" : "bts:unknown" + } ], + "rdfs:label" : "MulticentricBreastCarcinomaPresentIndicator", + "rdfs:comment" : "A response to indicate if there is breast cancer characterized by the presence of multiple cancerous tumors that originate from different clones and usually located in different quadrants of the breast.", + "@type" : "rdfs:Class", + "sms:displayName" : "MulticentricBreastCarcinomaPresentIndicator" + }, { + "@id" : "bts:UMITag", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "UMITag", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "UMITag", + "sms:required" : "sms:false" + }, { + "@id" : "bts:CellBarcodeLength", + "@type" : "rdfs:Class", + "rdfs:comment" : "Length of cell barcode read (in bp): number", + "rdfs:label" : "CellBarcodeLength", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "CellBarcodeLength", + "sms:required" : "sms:false" + }, { + "@id" : "bts:ClassBRCA1", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "ClassBRCA1", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "ClassBRCA1", + "sms:required" : "sms:false" + }, { + "@id" : "bts:SectionNumberinSequence", + "@type" : "rdfs:Class", + "rdfs:comment" : "Numeric value (integer, including ranges) provided to a sample in a series of sections (list all adjacent sections in the Adjacent Biospecimen IDs field)", + "rdfs:label" : "SectionNumberinSequence", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "SectionNumberinSequence", + "sms:required" : "sms:false" + }, { + "@id" : "bts:SampleCollectionCenter", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "SampleCollectionCenter", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "SampleCollectionCenter", + "sms:required" : "sms:false" + }, { + "@id" : "bts:CopyNumber", + "@type" : "rdfs:Class", + "rdfs:comment" : "Numeric value used to describe the number of times a section of the genome is repeated or copied within an insertion, duplication or deletion variant. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", + "rdfs:label" : "CopyNumber", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "CopyNumber", + "sms:required" : "sms:false" + }, { + "@id" : "bts:SectioningDaysfromIndex", + "@type" : "rdfs:Class", + "rdfs:comment" : "Number of days from the research participant's index date that the biospecimen was sectioned after collection", + "rdfs:label" : "SectioningDaysfromIndex", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "SectioningDaysfromIndex", + "sms:required" : "sms:false" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:Immersion", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:Air" + }, { + "@id" : "bts:Oil" + }, { + "@id" : "bts:Water" + }, { + "@id" : "bts:Other" + } ], + "rdfs:label" : "Immersion", + "rdfs:comment" : "Immersion medium", + "@type" : "rdfs:Class", + "sms:displayName" : "Immersion" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:ScATACseqRead1", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:CellBarcodeandDNAInsert" + }, { + "@id" : "bts:SampleIndexandDNAInsert" + }, { + "@id" : "bts:DNAInsert" + }, { + "@id" : "bts:SampleIndex" + }, { + "@id" : "bts:CellBarcode" + } ], + "rdfs:label" : "ScATACseqRead1", + "rdfs:comment" : "Read 1 content description", + "@type" : "rdfs:Class", + "sms:displayName" : "ScATACseqRead1" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:Pyramid", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ ], + "rdfs:label" : "Pyramid", + "rdfs:comment" : "Does data file contain pyramid of images", + "@type" : "rdfs:Class", + "sms:displayName" : "Pyramid" + }, { + "@id" : "bts:SampleSite", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "SampleSite", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "SampleSite", + "sms:required" : "sms:false" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:MismatchRepairSystemStatus", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:MismatchrepairdeficiencyMMRD" + }, { + "@id" : "bts:MismatchrepairproficiencyMMPP" + }, { + "@id" : "bts:MicrosatelliteinstabilityhighMSIH" + }, { + "@id" : "bts:MicrosatellitestableMSS" + }, { + "@id" : "bts:unknownorother" + } ], + "rdfs:label" : "MismatchRepairSystemStatus", + "rdfs:comment" : "The text that best describes the condition or state of MMR (mismatch repair system) in the patient", + "@type" : "rdfs:Class", + "sms:displayName" : "MismatchRepairSystemStatus" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:Tseries", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:Yes" + }, { + "@id" : "bts:No" + } ], + "rdfs:label" : "Tseries", + "rdfs:comment" : "Does data file contain a time-series of images", + "@type" : "rdfs:Class", + "sms:displayName" : "Tseries" + }, { + "@id" : "bts:Component", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "Component", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "Component", + "sms:required" : "sms:false" + }, { + "@id" : "bts:RelativeswithCancerHistoryCount", + "@type" : "rdfs:Class", + "rdfs:comment" : "The number of relatives the patient has with a known history of cancer.", + "rdfs:label" : "RelativeswithCancerHistoryCount", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "RelativeswithCancerHistoryCount", + "sms:required" : "sms:false" + }, { + "@id" : "bts:AlcoholDrinksPerDay", + "@type" : "rdfs:Class", + "rdfs:comment" : "Numeric value used to describe the average number of alcoholic beverages a person consumes per day.", + "rdfs:label" : "AlcoholDrinksPerDay", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "AlcoholDrinksPerDay", + "sms:required" : "sms:false" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:EndBias", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:3Prime" + }, { + "@id" : "bts:5Prime" + }, { + "@id" : "bts:FullLengthTranscript" + } ], + "rdfs:label" : "EndBias", + "rdfs:comment" : "The end of the cDNA molecule that is preferentially sequenced, e.g. 3/5 prime tag/end or the full length transcript", + "@type" : "rdfs:Class", + "sms:displayName" : "EndBias" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:SatelliteMetastasisPresentIndicator", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ ], + "rdfs:label" : "SatelliteMetastasisPresentIndicator", + "rdfs:comment" : "A yes/no indicator to ask if intransit metastases or satellite lesions are present.", + "@type" : "rdfs:Class", + "sms:displayName" : "SatelliteMetastasisPresentIndicator" + }, { + "@id" : "bts:ParentBiospecimenID", + "@type" : "rdfs:Class", + "rdfs:comment" : " Biospecimen identifier indicating the biospecimen(s) from which these files were derived; multiple parent biospecimen should be comma-separated", + "rdfs:label" : "ParentBiospecimenID", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "ParentBiospecimenID", + "sms:required" : "sms:false" + }, { + "@id" : "bts:AlcoholUse", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "AlcoholUse", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "AlcoholUse", + "sms:required" : "sms:false" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:NucleusIdentifier", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ ], + "rdfs:label" : "NucleusIdentifier", + "rdfs:comment" : "Unique nuclei barcode; added at transposition step. Determines which nucleus the reads originated from", + "@type" : "rdfs:Class", + "sms:displayName" : "NucleusIdentifier" + }, { + "@id" : "bts:Title", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "Title", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "Title", + "sms:required" : "sms:false" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:ClinicalBiospecimenType", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:ConnectiveTissue" + }, { + "@id" : "bts:PeritonealFluid" + }, { + "@id" : "bts:NotReported" + }, { + "@id" : "bts:Saliva" + }, { + "@id" : "bts:TissueNOS" + }, { + "@id" : "bts:Skin" + }, { + "@id" : "bts:unknown" + }, { + "@id" : "bts:Feces" + }, { + "@id" : "bts:UninvolvedTissueNOS" + }, { + "@id" : "bts:Plasma" + }, { + "@id" : "bts:Granulocyte" + }, { + "@id" : "bts:EmbryonicTissue" + }, { + "@id" : "bts:BuccalMucosa" + }, { + "@id" : "bts:Blood" + }, { + "@id" : "bts:MuscleTissue" + }, { + "@id" : "bts:CerebrospinalFluid" + }, { + "@id" : "bts:SoftTissue" + }, { + "@id" : "bts:Urine" + }, { + "@id" : "bts:PleuralFluid" + }, { + "@id" : "bts:BoneMarrow" + }, { + "@id" : "bts:Serum" + }, { + "@id" : "bts:EmbryonicFluid" + }, { + "@id" : "bts:NerveTissue" + }, { + "@id" : "bts:BuffyCoat" + } ], + "rdfs:label" : "ClinicalBiospecimenType", + "rdfs:comment" : "The text term used to describe the biological material used for testing, diagnostic, treatment or research purposes. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", + "@type" : "rdfs:Class", + "sms:displayName" : "ClinicalBiospecimenType" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:Antigen", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:CA19-9" + }, { + "@id" : "bts:CD79A" + }, { + "@id" : "bts:CD5" + }, { + "@id" : "bts:CD30" + }, { + "@id" : "bts:NotReported" + }, { + "@id" : "bts:CD20" + }, { + "@id" : "bts:CD14" + }, { + "@id" : "bts:CD19" + }, { + "@id" : "bts:unknown" + }, { + "@id" : "bts:CD34" + }, { + "@id" : "bts:CCND1" + }, { + "@id" : "bts:CD25" + }, { + "@id" : "bts:HLA-DR" + }, { + "@id" : "bts:Mesothelin" + }, { + "@id" : "bts:CD10" + }, { + "@id" : "bts:CD56" + }, { + "@id" : "bts:CD3" + }, { + "@id" : "bts:NSE" + }, { + "@id" : "bts:CA-125" + }, { + "@id" : "bts:CD22" + }, { + "@id" : "bts:CD23" + }, { + "@id" : "bts:SquamousCellCarcinomaAntigen" + }, { + "@id" : "bts:CEA" + }, { + "@id" : "bts:CD33" + }, { + "@id" : "bts:CD138" + }, { + "@id" : "bts:BCL6" + }, { + "@id" : "bts:CD7" + }, { + "@id" : "bts:CD117" + }, { + "@id" : "bts:CD15" + }, { + "@id" : "bts:CD45" + } ], + "rdfs:label" : "Antigen", + "rdfs:comment" : "The text term used to describe an antigen included in molecular testing. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", + "@type" : "rdfs:Class", + "sms:displayName" : "Antigen" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:OncotypeRiskGroup", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:unknown" + }, { + "@id" : "bts:Datanotavailable" + }, { + "@id" : "bts:Highrisk" + }, { + "@id" : "bts:Intermediaterisk" + }, { + "@id" : "bts:Lowrisk" + } ], + "rdfs:label" : "OncotypeRiskGroup", + "rdfs:comment" : "Text term that represents the risk group for breast cancer as determined by assessment of the Oncotype recurrence score.", + "@type" : "rdfs:Class", + "sms:displayName" : "OncotypeRiskGroup" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:ModeofCancerDetection", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:Datanotavailable" + }, { + "@id" : "bts:StandardofCareScreening" + }, { + "@id" : "bts:ClinicalExaminationofunrelatedcancersymptoms" + }, { + "@id" : "bts:Incidentaloma" + }, { + "@id" : "bts:IntervalCancer" + } ], + "rdfs:label" : "ModeofCancerDetection", + "rdfs:comment" : "Text term used to describe the mode of cancer detection, like standard of care screening or random detection", + "@type" : "rdfs:Class", + "sms:displayName" : "ModeofCancerDetection" + }, { + "@id" : "bts:RelationshipType", + "@type" : "rdfs:Class", + "rdfs:comment" : "The subgroup that describes the state of connectedness between members of the unit of society organized around kinship ties.", + "rdfs:label" : "RelationshipType", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "RelationshipType", + "sms:required" : "sms:false" + }, { + "@id" : "bts:FeatureReferenceId", + "@type" : "rdfs:Class", + "rdfs:comment" : "Unique ID for this feature. Must not contain whitespace, quote or comma characters. Each ID must be unique and must not collide with a gene identifier from the transcriptome [https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/using/feature-bc-analysis#feature-ref]", + "rdfs:label" : "FeatureReferenceId", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "FeatureReferenceId", + "sms:required" : "sms:false" + }, { + "@id" : "bts:RelationshipAgeatDiagnosis", + "@type" : "rdfs:Class", + "rdfs:comment" : "The age (in years) when the patient's relative was first diagnosed.", + "rdfs:label" : "RelationshipAgeatDiagnosis", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "RelationshipAgeatDiagnosis", + "sms:required" : "sms:false" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:SmokingExposure", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:Yes-SmokingExposure" + }, { + "@id" : "bts:NotReported" + }, { + "@id" : "bts:No-SmokingExposure" + } ], + "rdfs:label" : "SmokingExposure", + "rdfs:comment" : "Indicate if individual has smoking exposure", + "@type" : "rdfs:Class", + "sms:displayName" : "SmokingExposure" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:TestResult", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:Normal" + }, { + "@id" : "bts:NotReported" + }, { + "@id" : "bts:TestValueReported" + }, { + "@id" : "bts:unknown" + }, { + "@id" : "bts:Overexpressed" + }, { + "@id" : "bts:Intermediate" + }, { + "@id" : "bts:NotApplicable" + }, { + "@id" : "bts:LossofExpression" + }, { + "@id" : "bts:Low" + }, { + "@id" : "bts:High" + }, { + "@id" : "bts:Equivocal" + }, { + "@id" : "bts:CopyNumberReported" + }, { + "@id" : "bts:Positive" + }, { + "@id" : "bts:Negative" + }, { + "@id" : "bts:AbnormalNOS" + } ], + "rdfs:label" : "TestResult", + "rdfs:comment" : "The text term used to describe the result of the molecular test. If the test result was a numeric value see test_value. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", + "@type" : "rdfs:Class", + "sms:displayName" : "TestResult" + }, { + "@id" : "bts:MedianFractionofReadsinAnnotatedcisDNAElements", + "@type" : "rdfs:Class", + "rdfs:comment" : "Median fraction of reads in annotated cis-DNA elements (FRIADE)", + "rdfs:label" : "MedianFractionofReadsinAnnotatedcisDNAElements", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "MedianFractionofReadsinAnnotatedcisDNAElements", + "sms:required" : "sms:false" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:Zygosity", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:unknown" + }, { + "@id" : "bts:NotReported" + }, { + "@id" : "bts:Heterozygous" + }, { + "@id" : "bts:Hemizygous" + }, { + "@id" : "bts:Homozygous" + }, { + "@id" : "bts:Nullizygous" + } ], + "rdfs:label" : "Zygosity", + "rdfs:comment" : "The text term used to describe the zygosity of a specific genetic variant.", + "@type" : "rdfs:Class", + "sms:displayName" : "Zygosity" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:BreastImagingPerformedType", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:unknown" + }, { + "@id" : "bts:Datanotavailable" + }, { + "@id" : "bts:Mammogram" + }, { + "@id" : "bts:Ultrasound" + }, { + "@id" : "bts:MRI" + }, { + "@id" : "bts:PET/CT" + }, { + "@id" : "bts:CT" + }, { + "@id" : "bts:Multipleimagingmodalities" + } ], + "rdfs:label" : "BreastImagingPerformedType", + "rdfs:comment" : "The kind of technology or method performed for screening, diagnosis, surgical procedures or therapy that aids in the visualization of the breast(s).", + "@type" : "rdfs:Class", + "sms:displayName" : "BreastImagingPerformedType" + }, { + "@id" : "bts:PackYearsSmoked", + "@type" : "rdfs:Class", + "rdfs:comment" : "Numeric computed value to represent lifetime tobacco exposure defined as number of cigarettes smoked per day x number of years smoked divided by 20.", + "rdfs:label" : "PackYearsSmoked", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "PackYearsSmoked", + "sms:required" : "sms:false" + }, { + "@id" : "bts:TobaccoUseperDay", + "@type" : "rdfs:Class", + "rdfs:comment" : "Numeric value that represents the number of times the patient uses tobacco each day.", + "rdfs:label" : "TobaccoUseperDay", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "TobaccoUseperDay", + "sms:required" : "sms:false" + }, { + "@id" : "bts:TechnicalReplicateGroup", + "@type" : "rdfs:Class", + "rdfs:comment" : "A common term for all files belonging to the same cell or library. Provide a numbering of each library prep batch (can differ from encapsulation and sequencing batch)", + "rdfs:label" : "TechnicalReplicateGroup", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "TechnicalReplicateGroup", + "sms:required" : "sms:false" + }, { + "@id" : "bts:Dilution", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "Dilution", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "Dilution", + "sms:required" : "sms:false" + }, { + "@id" : "bts:FOVY", + "@type" : "rdfs:Class", + "rdfs:comment" : "Field of view Y dimension. 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+ }, { + "@id" : "bts:Ileum" + }, { + "@id" : "bts:Overlappinglesionofheartmediastinumandpleura" + }, { + "@id" : "bts:Exocervix" + }, { + "@id" : "bts:PancreasNOS" + }, { + "@id" : "bts:Epididymis" + }, { + "@id" : "bts:KidneyNOS" + }, { + "@id" : "bts:AnusNOS" + }, { + "@id" : "bts:Cerebrum" + }, { + "@id" : "bts:Overlappinglesionofbreast" + }, { + "@id" : "bts:Overlappinglesionofperipheralnervesandautonomicnervoussystem" + }, { + "@id" : "bts:Fundusofstomach" + }, { + "@id" : "bts:OropharynxNOS" + }, { + "@id" : "bts:Urachus" + }, { + "@id" : "bts:Labiummajus" + }, { + "@id" : "bts:Parametrium" + }, { + "@id" : "bts:Vestibuleofmouth" + }, { + "@id" : "bts:Lowerthirdofesophagus" + }, { + "@id" : "bts:Overlappinglesionofdigestivesystem" + }, { + "@id" : "bts:Bonesofskullandfaceandassociatedjoints" + }, { + "@id" : "bts:Lymphnodesofaxillaorarm" + }, { + "@id" : "bts:SoftpalateNOS" + }, { + "@id" : "bts:Hepaticflexureofcolon" + }, { + "@id" : "bts:Subglottis" + }, { + "@id" : 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"bts:IsletsofLangerhans" + }, { + "@id" : "bts:Isthmusuteri" + }, { + "@id" : "bts:Spinalmeninges" + }, { + "@id" : "bts:Myometrium" + }, { + "@id" : "bts:Pelvicbonessacrumcoccyxandassociatedjoints" + }, { + "@id" : "bts:Connectivesubcutaneousandothersofttissuesoflowerlimbandhip" + }, { + "@id" : "bts:Anterior2/3oftongueNOS" + }, { + "@id" : "bts:Upperthirdofesophagus" + }, { + "@id" : "bts:MeningesNOS" + }, { + "@id" : "bts:Prostategland" + }, { + "@id" : "bts:Overlappinglesionofsmallintestine" + }, { + "@id" : "bts:Lowergum" + }, { + "@id" : "bts:Paraspinal" + }, { + "@id" : "bts:Appendix" + }, { + "@id" : "bts:ScrotumNOS" + }, { + "@id" : "bts:Overlappinglesionoflarynx" + }, { + "@id" : "bts:Mainbronchus" + }, { + "@id" : "bts:Descendedtestis" + }, { + "@id" : "bts:Cloacogeniczone" + }, { + "@id" : "bts:ConnectivesubcutaneousandothersofttissuesoftrunkNOS" + }, { + "@id" : "bts:Heart" + }, { + "@id" : "bts:MucosaoflipNOS" + }, { + "@id" : "bts:Broadligament" + }, { + "@id" : "bts:Headofpancreas" + }, { + "@id" : "bts:Overlappinglesionofbonesjointsandarticularcartilageoflimbs" + }, { + "@id" : "bts:Temporallobe" + }, { + "@id" : "bts:Bodyofpenis" + }, { + "@id" : "bts:Overlappinglesionofbiliarytract" + }, { + "@id" : "bts:Labiumminus" + }, { + "@id" : "bts:Descendingcolon" + }, { + "@id" : "bts:Lateralwallofnasopharynx" + }, { + "@id" : "bts:Posteriorwallofhypopharynx" + }, { + "@id" : "bts:Nipple" + }, { + "@id" : "bts:Jejunum" + }, { + "@id" : "bts:Posteriorwallofbladder" + }, { + "@id" : "bts:Laryngealcartilage" + }, { + "@id" : "bts:Cecum" + }, { + "@id" : "bts:Skinoflowerlimbandhip" + }, { + "@id" : "bts:Corpusuteri" + }, { + "@id" : "bts:FemalegenitaltractNOS" + }, { + "@id" : "bts:AbdomenNOS" + }, { + "@id" : "bts:Tonsillarpillar" + }, { + "@id" : "bts:Otherspecifiedpartsoffemalegenitalorgans" + }, { + "@id" : "bts:Glottis" + }, { + "@id" : "bts:OrbitNOS" + }, { + "@id" : "bts:Skinoftrunk" + }, { + "@id" : "bts:VentricleNOS" + }, { + "@id" : "bts:Frontallobe" + } ], + "rdfs:label" : "SiteofResectionorBiopsy", + "rdfs:comment" : "The text term used to describe the anatomic site of origin, of the patient's malignant disease, as described by the World Health Organization's (WHO) International Classification of Diseases for Oncology (ICD-O).", + "@type" : "rdfs:Class", + "sms:displayName" : "SiteofResectionorBiopsy" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:Clonality", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:Clonal" + }, { + "@id" : "bts:Non-clonal" + } ], + "rdfs:label" : "Clonality", + "rdfs:comment" : "The text term used to describe whether a genomic variant is related by descent from a single progenitor cell. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", + "@type" : "rdfs:Class", + "sms:displayName" : "Clonality" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:Sex", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:true", + "schema:rangeIncludes" : [ { + "@id" : "bts:unknown" + }, { + "@id" : "bts:NotReported" + }, { + "@id" : "bts:female" + }, { + "@id" : "bts:male" + }, { + "@id" : "bts:unspecified" + } ], + "rdfs:label" : "Sex", + "rdfs:comment" : "Sex of individual", + "@type" : "rdfs:Class", + "sms:displayName" : "Sex" + }, { + "@id" : "bts:YearOfBirth", + "@type" : "rdfs:Class", + "rdfs:comment" : "Numeric value to represent the calendar year in which an individual was born.", + "rdfs:label" : "YearOfBirth", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "YearOfBirth", + "sms:required" : "sms:false" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:FOVXUnit", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:cm" + }, { + "@id" : "bts:mm" + }, { + "@id" : "bts:µm" + }, { + "@id" : "bts:nm" + }, { + "@id" : "bts:Å" + } ], + "rdfs:label" : "FOVXUnit", + "rdfs:comment" : "Field of view X dimension units. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", + "@type" : "rdfs:Class", + "sms:displayName" : "FOVXUnit" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:Pathogenicity", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:Benign" + }, { + "@id" : "bts:LikelyBenign" + }, { + "@id" : "bts:LikelyPathogenic" + }, { + "@id" : "bts:Pathogenic" + }, { + "@id" : "bts:UncertainSignificance" + } ], + "rdfs:label" : "Pathogenicity", + "rdfs:comment" : "The text used to describe a variant's level of involvement in the cause of the patient's disease according to the standards outlined by the American College of Medical Genetics and Genomics (ACMG).", + "@type" : "rdfs:Class", + "sms:displayName" : "Pathogenicity" + }, { + "@id" : "bts:SmokelessTobaccoQuitAge", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "SmokelessTobaccoQuitAge", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "SmokelessTobaccoQuitAge", + "sms:required" : "sms:false" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:PixelsBigEndian", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ ], + "rdfs:label" : "PixelsBigEndian", + "rdfs:comment" : "Boolean (True/False)", + "@type" : "rdfs:Class", + "sms:displayName" : "PixelsBigEndian" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:BreastCarcinomaDetectionMethodType", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:Other" + }, { + "@id" : "bts:unknown" + }, { + "@id" : "bts:ClinicalExam" + }, { + "@id" : "bts:Datanotavailable" + }, { + "@id" : "bts:NippleDischarge" + }, { + "@id" : "bts:ScreeningMammography" + }, { + "@id" : "bts:ScreeningMRI" + }, { + "@id" : "bts:Selfexam" + } ], + "rdfs:label" : "BreastCarcinomaDetectionMethodType", + "rdfs:comment" : "The means, manner of procedure, or systematic course of actions performed in order to discover or identify breast cancer.", + "@type" : "rdfs:Class", + "sms:displayName" : "BreastCarcinomaDetectionMethodType" + }, { + "@id" : "bts:SizeZ", + "@type" : "rdfs:Class", + "rdfs:comment" : "Size of image: Z dimension (in pixels). Integer >= 1", + "rdfs:label" : "SizeZ", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "SizeZ", + "sms:required" : "sms:false" + }, { + "@id" : "bts:COVID19AntibodyTesting", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "COVID19AntibodyTesting", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "COVID19AntibodyTesting", + "sms:required" : "sms:false" + }, { + "@id" : "bts:BMI", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "BMI", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "BMI", + "sms:required" : "sms:false" + }, { + "@id" : "bts:EmptyWellBarcode", + "@type" : "rdfs:Class", + "rdfs:comment" : "Unique cell barcode assigned to empty cells used as controls in CEL-seq2 assays.", + "rdfs:label" : "EmptyWellBarcode", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "EmptyWellBarcode", + "sms:required" : "sms:false" + }, { + "@id" : "bts:BreastCarcinomaHER2RatioDiagnosis", + "@type" : "rdfs:Class", + "rdfs:comment" : "HER2 ratio of the participant at diagnosis", + "rdfs:label" : "BreastCarcinomaHER2RatioDiagnosis", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "BreastCarcinomaHER2RatioDiagnosis", + "sms:required" : "sms:false" + }, { + "@id" : "bts:TimebetweenWakingandFirstSmoke", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "TimebetweenWakingandFirstSmoke", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "TimebetweenWakingandFirstSmoke", + "sms:required" : "sms:false" + }, { + "@id" : "bts:MedianPercentageofMitochondrialReadsperNucleus", + "@type" : "rdfs:Class", + "rdfs:comment" : "Contamination from mitochondrial sequences", + "rdfs:label" : "MedianPercentageofMitochondrialReadsperNucleus", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "MedianPercentageofMitochondrialReadsperNucleus", + "sms:required" : "sms:false" + }, { + "@id" : "bts:PhysicalSizeZ", + "@type" : "rdfs:Class", + "rdfs:comment" : "Physical size (Z-dimension) of a pixel. Units are set by PhysicalSizeZUnit. Floating point value > 0.", + "rdfs:label" : "PhysicalSizeZ", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "PhysicalSizeZ", + "sms:required" : "sms:false" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:CountryofResidence", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:TrinidadandTobago" + }, { + "@id" : "bts:Botswana" + }, { + "@id" : "bts:Malaysia" + }, { + "@id" : "bts:Suriname" + }, { + "@id" : "bts:Uruguay" + }, { + "@id" : "bts:Gibraltar" + }, { + "@id" : "bts:Andorra" + }, { + "@id" : "bts:CaymanIslands" + }, { + "@id" : "bts:Mozambique" + }, { + "@id" : "bts:Dominica" + }, { + "@id" : "bts:Tajikistan" + }, { + "@id" : "bts:Barbados" + }, { + "@id" : "bts:Seychelles" + }, { + "@id" : "bts:Curacao" + }, { + "@id" : "bts:Coted'Ivoire" + }, { + "@id" : "bts:Albania" + }, { + "@id" : "bts:China" + }, { + "@id" : "bts:Oman" + }, { + "@id" : "bts:Congo" + }, { + "@id" : "bts:Burundi" + }, { + "@id" : "bts:FalklandIslands(Malvinas)" + }, { + "@id" : "bts:Kazakhstan" + }, { + "@id" : "bts:Australia" + }, { + "@id" : "bts:France" + }, { + "@id" : "bts:Bahrain" + }, { + "@id" : "bts:SolomonIslands" + }, { + "@id" : "bts:Tanzania" + }, { + "@id" : "bts:FrenchGuiana" + }, { + "@id" : "bts:FederatedStatesofMicronesia" + }, { + "@id" : "bts:AntiguaandBarbuda" + }, { + "@id" : "bts:Colombia" + }, { + "@id" : "bts:Fiji" + }, { + "@id" : "bts:SaoTomeandPrincipe" + }, { + "@id" : "bts:Brazil" + }, { + "@id" : "bts:Guam" + }, { + "@id" : "bts:SouthAfrica" + }, { + "@id" : "bts:Denmark" + }, { + "@id" : "bts:Kyrgyzstan" + }, { + "@id" : "bts:Tunisia" + }, { + "@id" : "bts:Mexico" + }, { + "@id" : "bts:Martinique" + }, { + "@id" : "bts:BurkinaFaso" + }, { + "@id" : "bts:India" + }, { + "@id" : "bts:Myanmar" + }, { + "@id" : "bts:Malawi" + }, { + "@id" : "bts:Sweden" + }, { + "@id" : "bts:Macau" + }, { + "@id" : "bts:Cambodia" + }, { + "@id" : "bts:EquatorialGuinea" + }, { + "@id" : "bts:Senegal" + }, { + "@id" : "bts:Guernsey" + }, { + "@id" : "bts:Azerbaijan" + }, { + "@id" : "bts:Angola" + }, { + "@id" : "bts:Kuwait" + }, { + "@id" : "bts:PapuaNewGuinea" + }, { + "@id" : "bts:CentralAfricanRepublic" + }, { + "@id" : "bts:Bhutan" + }, { + "@id" : "bts:Uzbekistan" + }, { + "@id" : "bts:Portugal" + }, { + "@id" : "bts:IsleofMan" + }, { + "@id" : "bts:Guatemala" + }, { + "@id" : "bts:SaintHelenaAscensionandTristandaCunha" + }, { + "@id" : "bts:Kiribati" + }, { + "@id" : "bts:Peru" + }, { + "@id" : "bts:SouthSudan" + }, { + "@id" : "bts:NorthMacedonia" + }, { + "@id" : "bts:DemocraticRepublicoftheCongo" + }, { + "@id" : "bts:Belarus" + }, { + "@id" : "bts:Madagascar" + }, { + "@id" : "bts:Singapore" + }, { + "@id" : "bts:Togo" + }, { + "@id" : "bts:Gambia" + }, { + "@id" : "bts:Georgia" + }, { + "@id" : "bts:Italy" + }, { + "@id" : "bts:Tuvalu" + }, { + "@id" : "bts:Eswatini" + }, { + "@id" : "bts:Nepal" + }, { + "@id" : "bts:Kenya" + }, { + "@id" : "bts:Niger" + }, { + "@id" : "bts:Israel" + }, { + "@id" : "bts:Iran" + }, { + "@id" : "bts:Liberia" + }, { + "@id" : "bts:Mali" + }, { + "@id" : "bts:Belize" + }, { + "@id" : "bts:Hungary" + }, { + "@id" : "bts:HolySee" + }, { + "@id" : "bts:Serbia" + }, { + "@id" : "bts:Belgium" + }, { + "@id" : "bts:Bermuda" + }, { + "@id" : "bts:Anguilla" + }, { + "@id" : "bts:Jamaica" + }, { + "@id" : "bts:Lebanon" + }, { + "@id" : "bts:Svalbard&JanMayenIslands" + }, { + "@id" : "bts:Cyprus" + }, { + "@id" : "bts:Norway" + }, { + "@id" : "bts:Somalia" + }, { + "@id" : "bts:Japan" + }, { + "@id" : "bts:Guyana" + }, { + "@id" : "bts:Paraguay" + }, { + "@id" : "bts:NewZealand" + }, { + "@id" : "bts:Palau" + }, { + "@id" : "bts:Laos" + }, { + "@id" : "bts:Latvia" + }, { + "@id" : "bts:Ethiopia" + }, { + "@id" : "bts:Cuba" + }, { + "@id" : "bts:FrenchPolynesia" + }, { + "@id" : "bts:Slovenia" + }, { + "@id" : "bts:Philippines" + }, { + "@id" : "bts:Mongolia" + }, { + "@id" : "bts:Switzerland" + }, { + "@id" : "bts:Bahamas" + }, { + "@id" : "bts:Samoa" + }, { + "@id" : "bts:ElSalvador" + }, { + "@id" : "bts:Chad" + }, { + "@id" : "bts:Honduras" + }, { + "@id" : "bts:Bangladesh" + }, { + "@id" : "bts:Tonga" + }, { + "@id" : "bts:Croatia" + }, { + "@id" : "bts:BosniaandHerzegovina" + }, { + "@id" : "bts:Eritrea" + }, { + "@id" : "bts:SaintKittsandNevis" + }, { + "@id" : "bts:Vietnam" + }, { + "@id" : "bts:NorthernMarianaIslands" + }, { + "@id" : "bts:CapeVerde" + }, { + "@id" : "bts:CookIslands" + }, { + "@id" : "bts:Turkmenistan" + }, { + "@id" : "bts:WesternSahara" + }, { + "@id" : "bts:Jordan" + }, { + "@id" : "bts:Romania" + }, { + "@id" : "bts:Uganda" + }, { + "@id" : "bts:Aruba" + }, { + "@id" : "bts:HongKong" + }, { + "@id" : "bts:Syria" + }, { + "@id" : "bts:Germany" + }, { + "@id" : "bts:Chile" + }, { + "@id" : "bts:Austria" + }, { + "@id" : "bts:Gabon" + }, { + "@id" : "bts:Kosovo" + }, { + "@id" : "bts:Qatar" 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Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", + "@type" : "rdfs:Class", + "sms:displayName" : "MolecularAnalysisMethod" + }, { + "@id" : "bts:ParticipantID", + "@type" : "rdfs:Class", + "rdfs:comment" : " ID associated with a patient", + "rdfs:label" : "ParticipantID", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "ParticipantID", + "sms:required" : "sms:true" + }, { + "@id" : "bts:COVID19CurrentStatus", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "COVID19CurrentStatus", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "COVID19CurrentStatus", + "sms:required" : "sms:false" + }, { + "@id" : "bts:FrameAveraging", + "@type" : "rdfs:Class", + "rdfs:comment" : "Number of frames averaged together (if no averaging, set to 1). 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"bts:Bronchio-alveolarcarcinomamucinous" + }, { + "@id" : "bts:CarcinomainapolypNOS" + }, { + "@id" : "bts:AcutemyeloidleukemiaMLL" + }, { + "@id" : "bts:Tubulocysticrenalcellcarcinoma" + }, { + "@id" : "bts:MelanocytomaNOS" + }, { + "@id" : "bts:ChronicmyelogenousleukemiaPhiladelphiachromosome(Ph1)positive" + }, { + "@id" : "bts:Ewingsarcoma" + }, { + "@id" : "bts:GliomaNOS" + }, { + "@id" : "bts:Bronchial-associatedlymphoidtissuelymphoma" + }, { + "@id" : "bts:Papillotubularadenoma" + }, { + "@id" : "bts:Papillomaofbladder" + }, { + "@id" : "bts:Bronchio-alveolarcarcinomamixedmucinousandnon-mucinous" + }, { + "@id" : "bts:Carcinomainpleomorphicadenoma" + }, { + "@id" : "bts:Chondrosarcomagrade2/3" + }, { + "@id" : "bts:Neoplasmsecondary" + }, { + "@id" : "bts:Rhabdomyosarcomawithganglionicdifferentiation" + }, { + "@id" : "bts:Chroniclymphocyticleukemia" + }, { + "@id" : "bts:Liposarcomawelldifferentiated" + }, { + "@id" : "bts:Undifferentiatedpleomorphicsarcoma" + }, { + "@id" : "bts:Secretorycarcinomaofbreast" + }, { + "@id" : "bts:Lobularcarcinomanoninfiltrating" + }, { + "@id" : "bts:Mixedadenocarcinomaandsquamouscellcarcinoma" + }, { + "@id" : "bts:Melanoticneurofibroma" + }, { + "@id" : "bts:ChronicgranulocyticleukemiaPhiladelphiachromosome(Ph1)positive" + }, { + "@id" : "bts:Hepatocellularadenoma" + }, { + "@id" : "bts:BurkittlymphomaNOS(Includesallvariants)" + }, { + "@id" : "bts:ParagangliomaNOS" + }, { + "@id" : "bts:DiffuselargeB-celllymphomaNOS" + }, { + "@id" : "bts:NevusNOS" + }, { + "@id" : "bts:Hepatoidcarcinoma" + }, { + "@id" : "bts:MixedtumormalignantNOS" + }, { + "@id" : "bts:Rhabdoidsarcoma" + }, { + "@id" : "bts:Tubulolobularcarcinoma" + }, { + "@id" : "bts:Papillomatosisglandular" + }, { + "@id" : "bts:Bronchialadenomacarcinoid" + }, { + "@id" : "bts:Tumorembolus" + }, { + "@id" : "bts:DuctcarcinomaNOS" + }, { + "@id" : "bts:RhabdomyosarcomaNOS" + }, { + "@id" : "bts:LobularcarcinomaNOS" + }, { + "@id" : "bts:Bronchialadenomacylindroid" + }, { + "@id" : "bts:EpidermoidcarcinomaNOS" + }, { + "@id" : "bts:Papillaryglioneuronaltumor" + }, { + "@id" : "bts:DuctalcarcinomainsituNOS" + }, { + "@id" : "bts:Unclassifiedtumormalignantuncertainwhetherprimaryormetastatic" + }, { + "@id" : "bts:Glioblastoma" + }, { + "@id" : "bts:Papillaryandfollicularcarcinoma" + }, { + "@id" : "bts:DuctalcarcinomaNOS" + }, { + "@id" : "bts:Tumorbenign" + }, { + "@id" : "bts:Pagetdiseasemammary" + }, { + "@id" : "bts:Diffuseastrocytomalowgrade" + }, { + "@id" : "bts:Ductcellcarcinoma" + }, { + "@id" : "bts:Preleukemicsyndrome" + }, { + "@id" : "bts:Carcinomadiffusetype" + }, { + "@id" : "bts:Neurosarcoma" + }, { + "@id" : "bts:PapillomatosisNOS" + }, { + "@id" : "bts:Therapyrelatedmyeloidneoplasm" + }, { + "@id" : "bts:Renalcarcinomacollectingducttype" + }, { + "@id" : "bts:NeurofibromaNOS" + }, { + "@id" : "bts:Meningiomaanaplastic" + }, { + "@id" : "bts:CementomaNOS" + }, { + "@id" : "bts:DermatofibromaNOS" + }, { + "@id" : "bts:AstrocytomaNOS" + }, { + "@id" : "bts:Livercelladenoma" + }, { + "@id" : "bts:TubulovillousadenomaNOS" + }, { + "@id" : "bts:MelanomaNOS" + }, { + "@id" : "bts:PapillomaNOS" + }, { + "@id" : "bts:Esophagealglandulardysplasia(intraepithelialneoplasia)highgrade" + }, { + "@id" : "bts:Tumorcellsmalignant" + }, { + "@id" : "bts:MalignantlymphomadiffuseNOS" + }, { + "@id" : "bts:Renalcellcarcinomachromophobetype" + }, { + "@id" : "bts:Tubularcarcinoid" + }, { + "@id" : "bts:Nonpigmentednevus" + }, { + "@id" : "bts:Rodentulcer" + }, { + "@id" : "bts:HodgkindiseaseNOS" + }, { + "@id" : "bts:Acinarcellcarcinoma" + }, { + "@id" : "bts:Papillaryadenofibroma" + }, { + "@id" : "bts:Oatcellcarcinoma" + }, { + "@id" : "bts:Adenocarcinomainadenomatouspolyp" + }, { + "@id" : "bts:SpindlecellcarcinomaNOS" + }, { + "@id" : "bts:Adenocarcinomainpolypoidadenoma" + }, { + "@id" : "bts:Papillaryserousadenocarcinoma" + }, { + "@id" : "bts:SplenicdiffuseredpulpsmallB-celllymphoma" + }, { + "@id" : "bts:ChondromaNOS" + }, { + "@id" : "bts:Bileductadenoma" + }, { + "@id" : "bts:Adenocarcinomainvillousadenoma" + }, { + "@id" : "bts:SpindlecellmelanomaNOS" + }, { + "@id" : "bts:ClassicalHodgkinlymphomamixedcellularityNOS" + }, { + "@id" : "bts:Combinedsmallcell-largecarcinoma" + }, { + "@id" : "bts:Eosinophilcarcinoma" + }, { + "@id" : "bts:PancreaticendocrinetumorNOS" + }, { + "@id" : "bts:AdenocarcinomaNOS" + }, { + "@id" : "bts:SarcomaNOS" + }, { + "@id" : "bts:ChronicmyelocyticleukemiaNOS" + }, { + "@id" : "bts:Adenocarcinomainsitunon-mucinous" + }, { + "@id" : "bts:ChronicleukemiaNOS" + }, { + "@id" : "bts:Pro-TALL" + }, { + "@id" : "bts:Esophagealglandulardysplasia(intraepithelialneoplasia)lowgrade" + }, { + "@id" : "bts:Lymphoblastoma" + }, { + "@id" : "bts:Mixedmedullary-papillarycarcinoma" + }, { + "@id" : "bts:ClassicalHodgkinlymphomanodularsclerosisNOS" + }, { + "@id" : "bts:OsteoblastomaNOS" + }, { + "@id" : "bts:CerebellarsarcomaNOS" + }, { + "@id" : "bts:Paragangliomabenign" + }, { + "@id" : "bts:Intraductaltubular-papillaryneoplasmlowgrade" + }, { + "@id" : "bts:Familialadenomatouspolyposis" + }, { + "@id" : "bts:Mixedsquamouscellandglandularpapilloma" + }, { + "@id" : "bts:IntraductalcarcinomaNOS" + }, { + "@id" : "bts:Transitionalcarcinoma" + }, { + "@id" : "bts:Gastrinomamalignant" + }, { + "@id" : "bts:Melanocytomaeyeball" + }, { + "@id" : "bts:Mixedmedullary-follicularcarcinoma" + }, { + "@id" : "bts:ChronicmyelogenousleukemiaBCR-ABLpositive" + }, { + "@id" : "bts:Basophilcarcinoma" + }, { + "@id" : "bts:NeuroepitheliomaNOS" + }, { + "@id" : "bts:Adenocarcinomapancreatobiliarytype" + }, { + "@id" : "bts:PrecancerousmelanosisNOS" + }, { + "@id" : "bts:Undifferentiatedroundcellsarcoma" + }, { + "@id" : "bts:MalignantlymphomalargecellNOS" + }, { + "@id" : "bts:Tubulo-papillaryadenoma" + }, { + "@id" : "bts:ClassicalHodgkinlymphomalymphocytedepletiondiffusefibrosis" + }, { + "@id" : "bts:Cerebellarliponeurocytoma" + }, { + "@id" : "bts:Pulmonaryblastoma" + }, { + "@id" : "bts:Burkitt-likelymphoma" + }, { + "@id" : "bts:GangliogliomaNOS" + }, { + "@id" : "bts:T-celllymphomaNOS" + }, { + "@id" : "bts:Papillarytumorofthepinealregion" + }, { + "@id" : "bts:IntraductalpapillaryadenocarcinomaNOS" + }, { + "@id" : "bts:MalignantlymphomaNOS" + }, { + "@id" : "bts:Hepatoidadenocarcinoma" + }, { + "@id" : "bts:PapillaryadenomaNOS" + }, { + "@id" : "bts:Carcinomainsituinadenomatouspolyp" + }, { + "@id" : "bts:Eosinophilicgranuloma" + }, { + "@id" : "bts:Medullaryadenocarcinoma" + }, { + "@id" : "bts:Malignantlymphomamixedcelltypenodular" + }, { + "@id" : "bts:IntraductalcarcinomanoninfiltratingNOS" + }, { + "@id" : "bts:Interstitialcelltumormalignant" + }, { + "@id" : "bts:LymphomaNOS" + }, { + "@id" : "bts:Unclassifiedtumorborderlinemalignancy" + }, { + "@id" : "bts:Adenocarcinomaintubularadenoma" + }, { + "@id" : "bts:Intraductalpapillarycarcinoma" + }, { + "@id" : "bts:MyelocyticleukemiaNOS" + }, { + "@id" : "bts:TumorcellsNOS" + }, { + "@id" : "bts:LiposarcomaNOS" + }, { + "@id" : "bts:Interstitialcelltumorbenign" + }, { + "@id" : "bts:Neoplasmmetastatic" + }, { + "@id" : "bts:Chronicneutrophilicleukemia" + }, { + "@id" : "bts:Bronchiolo-alveolarcarcinomagobletcelltype" + }, { + "@id" : "bts:Papillaryadenocarcinomafollicularvariant" + }, { + "@id" : "bts:Hepatocarcinoma" + }, { + "@id" : "bts:Undifferentiateduterinesarcoma" + }, { + "@id" : "bts:Renalcellcarcinomaunclassified" + }, { + "@id" : "bts:Papillaryepidermoidcarcinoma" + }, { + "@id" : "bts:PigmentednevusNOS" + }, { + "@id" : "bts:MyeloidleukemiaNOS" + }, { + "@id" : "bts:Esophagealsquamousintraepithelialneoplasia(dysplasia)highgrade" + }, { + "@id" : "bts:MalignantlymphomalargeB-cellNOS" + }, { + "@id" : "bts:Non-lymphocyticleukemiaNOS" + }, { + "@id" : "bts:Basalcelladenocarcinoma" + }, { + "@id" : "bts:AdultT-celllymphoma/leukemia" + }, { + "@id" : "bts:Mixedpancreaticendocrineandexocrinetumormalignant" + }, { + "@id" : "bts:EpendymomaNOS" + }, { + "@id" : "bts:PeripheralT-celllymphomaNOS" + }, { + "@id" : "bts:Pulmonaryadenomatosis" + }, { + "@id" : "bts:Pleomorphiclobularcarcinoma" + }, { + "@id" : "bts:Pagetdiseaseofbreast" + }, { + "@id" : "bts:HodgkinparagranulomaNOS" + }, { + "@id" : "bts:MalignantmelanomaNOS" + }, { + "@id" : "bts:Papillarytransitionalcellcarcinoma" + }, { + "@id" : "bts:Acutelymphocyticleukemia" + }, { + "@id" : "bts:Seroussurfacepapillarycarcinoma" + }, { + "@id" : "bts:Basalcelltumor" + }, { + "@id" : "bts:ChronicmyelomonocyticleukemiaNOS" + }, { + "@id" : "bts:LymphaticleukemicNOS" + }, { + "@id" : "bts:TeratomaNOS" + }, { + "@id" : "bts:Malignantlymphomamixedcelltypefollicular" + }, { + "@id" : "bts:Bronchiolaradenocarcinoma" + }, { + "@id" : "bts:Basophiladenocarcinoma" + }, { + "@id" : "bts:Non-HodgkinlymphomaNOS" + }, { + "@id" : "bts:Haemangioblastoma" + }, { + "@id" : "bts:Intraductaltubular-papillaryneoplasmhighgrade" + }, { + "@id" : "bts:ChronicmyeloproliferativediseaseNOS" + }, { + "@id" : "bts:Rhabdoidmeningioma" + }, { + "@id" : "bts:RhabdoidtumorNOS" + }, { + "@id" : "bts:Carcinomaintestinaltype" + }, { + "@id" : "bts:ClassicalHodgkinlymphomalymphocytedepletionNOS" + }, { + "@id" : "bts:ChronicmyeloidleukemiaNOS" + }, { + "@id" : "bts:Melanoticmedulloblastoma" + }, { + "@id" : "bts:Melanoticneuroectodermaltumor" + }, { + "@id" : "bts:LobularcarcinomainsituNOS" + }, { + "@id" : "bts:Mixedsmallcellcarcinoma" + }, { + "@id" : "bts:Intradermalnevus" + }, { + "@id" : "bts:Bronchiolo-alveolarcarcinomaClaracell" + }, { + "@id" : "bts:Papillarysquamouscellcarcinomainsitu" + }, { + "@id" : "bts:Smallcellneuroendocrinecarcinoma" + }, { + "@id" : "bts:Malignantmelanomainprecancerousmelanosis" + }, { + "@id" : "bts:CarcinomaanaplasticNOS" + }, { + "@id" : "bts:Dysplasticnevus" + }, { + "@id" : "bts:Liposarcomadifferentiated" + }, { + "@id" : "bts:Combinedsmallcell-squamouscellcarcinoma" + }, { + "@id" : "bts:Acutelymphaticleukemia" + }, { + "@id" : "bts:Gliomamalignant" + }, { + "@id" : "bts:AdenocarcinomainsituNOS" + }, { + "@id" : "bts:Mucosal-associatedlymphoidtissuelymphoma" + }, { + "@id" : "bts:Spleniclymphomawithvillouslymphocytes" + }, { + "@id" : "bts:LargecellcarcinomaNOS" + }, { + "@id" : "bts:MicropapillarycarcinomaNOS" + }, { + "@id" : "bts:Undifferentiatedspindlecellsarcoma" + }, { + "@id" : "bts:IntraepidermalsquamouscellcarcinomaBowentype" + }, { + "@id" : "bts:EndometrioidadenofibromaNOS" + }, { + "@id" : "bts:MedullarycarcinomaNOS" + }, { + "@id" : "bts:T-celllargegranularlymphocytosis" + }, { + "@id" : "bts:IntraductaladenocarcinomanoninfiltratingNOS" + }, { + "@id" : "bts:OsteosarcomaNOS" + }, { + "@id" : "bts:Pancreatobiliary-typecarcinoma" + }, { + "@id" : "bts:Adenocarcinoidtumor" + }, { + "@id" : "bts:DiffuseastrocytomaIDH-mutant" + }, { + "@id" : "bts:Medullaryosteosarcoma" + }, { + "@id" : "bts:Adenocarcinomaintestinaltype" + }, { + "@id" : "bts:CarcinomainsituinapolypNOS" + }, { + "@id" : "bts:CarcinosarcomaNOS" + }, { + "@id" : "bts:Basalcelladenoma" + }, { + "@id" : "bts:AdultT-celllymphoma" + }, { + "@id" : "bts:Lobularadenocarcinoma" + }, { + "@id" : "bts:Melanocyticnevus" + }, { + "@id" : "bts:AdenocarcinomametastaticNOS" + }, { + "@id" : "bts:Pigmentedbasalcellcarcinoma" + }, { + "@id" : "bts:Astrocytomaanaplastic" + }, { + "@id" : "bts:Melanomamalignantofsoftparts" + }, { + "@id" : "bts:Smallcellosteosarcoma" + }, { + "@id" : "bts:Unclassifiedtumoruncertainwhetherbenignormalignant" + }, { + "@id" : "bts:Transitionalcellcarcinoma" + }, { + "@id" : "bts:Intraductalcarcinomaandlobularcarcinomainsitu" + }, { + "@id" : "bts:RhabdomyomaNOS" + }, { + "@id" : "bts:B-celllymphocyticleukemia/smalllymphocyticlymphoma" + }, { + "@id" : "bts:Capillaryhemangioma" + }, { + "@id" : "bts:PrecursorB-celllymphoblasticleukemia" + }, { + "@id" : "bts:Bronchiolo-alveolarcarcinomaClaracellandgobletcelltype" + }, { + "@id" : "bts:Eosinophiladenoma" + }, { + "@id" : "bts:SplenicB-celllymphoma/leukemiaunclassifiable" + }, { + "@id" : "bts:CompositeHodgkinandnon-Hodgkinlymphoma" + }, { + "@id" : "bts:Pagetdiseaseandinfiltratingductcarcinomaofbreast" + }, { + "@id" : "bts:NeurofibromatosisNOS" + }, { + "@id" : "bts:HodgkinlymphomaNOS" + }, { + "@id" : "bts:Melanomainsitu" + }, { + "@id" : "bts:SerouscystadenocarcinomaNOS" + }, { + "@id" : "bts:MalignantlymphomaHodgkin" + }, { + "@id" : "bts:Acutelymphoblasticleukemia-lymphomaNOS" + }, { + "@id" : "bts:Unclassifiedtumormalignant" + }, { + "@id" : "bts:Adultrhabdomyoma" + }, { + "@id" : "bts:Neoplasmuncertainwhetherbenignormalignant" + }, { + "@id" : "bts:ChronicmyelomonocyticleukemiaType1" + }, { + "@id" : "bts:DuctadenomaNOS" + }, { + "@id" : "bts:Neoplasmbenign" + }, { + "@id" : "bts:CarcinomaundifferentiatedNOS" + }, { + "@id" : "bts:Malignancy" + }, { + "@id" : "bts:Adenocarcinomainsitumucinous" + }, { + "@id" : "bts:Papillarysquamouscellcarcinoma" + }, { + "@id" : "bts:Blymphoblasticleukemia/lymphomawithhyperdiploidy" + }, { + "@id" : "bts:PrecursorT-celllymphoblasticleukemia" + }, { + "@id" : "bts:Tumorsecondary" + }, { + "@id" : "bts:Pancreatobiliaryneoplasmnon-invasive" + }, { + "@id" : "bts:Malignantmelanomaingiantpigmentednevus" + }, { + "@id" : "bts:Squamouscellcarcinomaadenoid" + }, { + "@id" : "bts:Acutemyelomonocyticleukemia" + }, { + "@id" : "bts:Bileductcystadenocarcinoma" + }, { + "@id" : "bts:Pancreaticendocrinetumornonfunctioning" + }, { + "@id" : "bts:Pleomorphicadenoma" + }, { + "@id" : "bts:Blymphoblasticleukemia/lymphomawithhypodiploidy(HypodiploidALL)" + }, { + "@id" : "bts:Renalcellcarcinomasarcomatoid" + }, { + "@id" : "bts:SplenicmarginalzoneB-celllymphoma" + }, { + "@id" : "bts:MalignantlymphomalargeB-celldiffuseNOS" + }, { + "@id" : "bts:Infiltratingductandcolloidcarcinoma" + }, { + "@id" : "bts:ChronicmyelomonocyticleukemiaTypeII" + }, { + "@id" : "bts:DuctadenocarcinomaNOS" + }, { + "@id" : "bts:Combined/mixedcarcinoidandadenocarcinoma" + }, { + "@id" : "bts:Haemangiosarcoma" + }, { + "@id" : "bts:Acutelymphoidleukemia" + }, { + "@id" : "bts:DiffuseastrocytomaIDH-wildtype" + }, { + "@id" : "bts:Intraductaltubulopapillaryneoplasm" + }, { + "@id" : "bts:Acutebasophilicleukaemia" + }, { + "@id" : "bts:Unclassifiedtumorbenign" + }, { + "@id" : "bts:Intraductalmicropapillarycarcinoma" + }, { + "@id" : "bts:Hodgkingranuloma" + }, { + "@id" : "bts:ChroniclymphocyticleukemiaB-celltype(includesallvariantsofBCLL)" + }, { + "@id" : "bts:Pancreatoblastoma" + }, { + "@id" : "bts:Bileductadenocarcinoma" + }, { + "@id" : "bts:Meningealmelanocytoma" + }, { + "@id" : "bts:HodgkinlymphomamixedcellularityNOS" + }, { + "@id" : "bts:InfiltratingductcarcinomaNOS" + }, { + "@id" : "bts:Esophagealsquamousintraepithelialneoplasia(dysplasia)lowgrade" + }, { + "@id" : "bts:SmallcellcarcinomaNOS" + }, { + "@id" : "bts:Inflammatorycarcinoma" + }, { + "@id" : "bts:Papillaryurothelialcarcinoma" + }, { + "@id" : "bts:Melanoticprogonoma" + }, { + "@id" : "bts:Centralneuroblastoma" + }, { + "@id" : "bts:MalignantlymphomalymphocyticNOS" + }, { + "@id" : "bts:MyelomaNOS" + }, { + "@id" : "bts:Adenocarcinomaendocervicaltype" + }, { + "@id" : "bts:AdenocarcinomainsituinapolypNOS" + }, { + "@id" : "bts:Neoplasmmalignantuncertainwhetherprimaryormetastatic" + }, { + "@id" : "bts:Pulmonaryarteryintimalsarcoma" + }, { + "@id" : "bts:IntraepidermalcarcinomaNOS" + }, { + "@id" : "bts:PapillaryserouscystadenomaNOS" + }, { + "@id" : "bts:CarcinomainsituNOS" + }, { + "@id" : "bts:TubularadenomaNOS" + }, { + "@id" : "bts:Tubulopapillaryadenocarcinoma" + }, { + "@id" : "bts:Pancreaticmicroadenoma" + }, { + "@id" : "bts:AcutelymphoblasticleukemiamatureB-celltype" + }, { + "@id" : "bts:c-ALL" + }, { + "@id" : "bts:AcuteleukemiaBurkitttype" + }, { + "@id" : "bts:Cervicalintraepithelialneoplasialowgrade" + }, { + "@id" : "bts:MixedtumorNOS" + }, { + "@id" : "bts:Bronchiolo-alveolaradenocarcinomaNOS" + }, { + "@id" : "bts:Myoepithelioma" + }, { + "@id" : "bts:Pancreaticendocrinetumormalignant" + }, { + "@id" : "bts:EndometrioidadenocarcinomaNOS" + }, { + "@id" : "bts:InfiltratingbasalcellcarcinomaNOS" + }, { + "@id" : "bts:PrecursorB-celllymphoblasticlymphoma" + }, { + "@id" : "bts:Pleomorphiclobularcarcinomainsitu" + }, { + "@id" : "bts:Mucousadenocarcinoma" + }, { + "@id" : "bts:Meningealmelanoma" + }, { + "@id" : "bts:Acutemyeloidleukemiaminimaldifferentiation" + }, { + "@id" : "bts:LymphoblasticleukemiaNOS" + }, { + "@id" : "bts:MelanoticMPNST" + }, { + "@id" : "bts:Astrocytomalowgrade" + }, { + "@id" : "bts:Multiplemyeloma" + }, { + "@id" : "bts:Papillaryrenalcellcarcinoma" + }, { + "@id" : "bts:MedulloblastomaNOS" + }, { + "@id" : "bts:AdenocarcinomainapolypNOS" + }, { + "@id" : "bts:Combinedsmallcellcarcinoma" + }, { + "@id" : "bts:Bileductcarcinoma" + }, { + "@id" : "bts:ChronicgranulocyticleukemiaNOS" + }, { + "@id" : "bts:Juvenilemyelomonocyticleukemia" + }, { + "@id" : "bts:NeoplasmNOS" + }, { + "@id" : "bts:Capillarylymphangioma" + }, { + "@id" : 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Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. 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"bts:CyCIF" + }, { + "@id" : "bts:t-CyCIF" + }, { + "@id" : "bts:GeoMX-DSP" + }, { + "@id" : "bts:ExSeq" + } ], + "rdfs:label" : "ImagingAssayType", + "rdfs:comment" : "Type of imaging assay", + "@type" : "rdfs:Class", + "sms:displayName" : "ImagingAssayType" + }, { + "@id" : "bts:NucleiBarcodeRead", + "@type" : "rdfs:Class", + "rdfs:comment" : "Nuclei Barcode Read", + "rdfs:label" : "NucleiBarcodeRead", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "NucleiBarcodeRead", + "sms:required" : "sms:false" + }, { + "@id" : "bts:OligoBarcodeUpperStrand", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "OligoBarcodeUpperStrand", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "OligoBarcodeUpperStrand", + "sms:required" : "sms:false" + }, { + "@id" : "bts:BreastCarcinomaHER2Centromere17CopynumberTotal", + "@type" : "rdfs:Class", + "rdfs:comment" : "Number of Cells Counted for HER2 & Centromere 17 Copy Numbers in a participant with breast cancer", + "rdfs:label" : "BreastCarcinomaHER2Centromere17CopynumberTotal", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "BreastCarcinomaHER2Centromere17CopynumberTotal", + "sms:required" : "sms:false" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:BiospecimenType", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:FluidsBiospecimenType" + }, { + "@id" : "bts:SputumBiospecimenType" + }, { + "@id" : "bts:TissueBiospecimenType" + }, { + "@id" : "bts:MouthRinseBiospecimenType" + }, { + "@id" : "bts:AscitesBiospecimenType" + }, { + "@id" : "bts:CellsBiospecimenType" + }, { + "@id" : "bts:BloodBiospecimenType" + }, { + "@id" : "bts:AnalyteBiospecimenType" + }, { + "@id" : "bts:BoneMarrowBiospecimenType" + }, { + "@id" : "bts:UrineBiospecimenType" + }, { + "@id" : "bts:StoolBiospecimenType" + } ], + "rdfs:label" : "BiospecimenType", + "rdfs:comment" : "Biospecimen Type", + "@type" : "rdfs:Class", + "sms:displayName" : "BiospecimenType" + }, { + "@id" : "bts:SmokeExposureDuration", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "SmokeExposureDuration", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "SmokeExposureDuration", + "sms:required" : "sms:false" + }, { + "@id" : "bts:MenstrualCyclePhase", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "MenstrualCyclePhase", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "MenstrualCyclePhase", + "sms:required" : "sms:false" + }, { + "@id" : "bts:ThresholdforMinimumPassingReads", + "@type" : "rdfs:Class", + "rdfs:comment" : "Threshold for calling cells", + "rdfs:label" : "ThresholdforMinimumPassingReads", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "ThresholdforMinimumPassingReads", + "sms:required" : "sms:false" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:ShippingConditionType", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:LiquidNitrogen" + }, { + "@id" : "bts:DryIce" + }, { + "@id" : "bts:AmbientPack" + }, { + "@id" : "bts:ColdPack" + }, { + "@id" : "bts:IcePack" + }, { + "@id" : "bts:SpecimenatRoomTemperature" + }, { + "@id" : "bts:OtherShippingEnvironment" + }, { + "@id" : "bts:NotShipped" + } ], + "rdfs:label" : "ShippingConditionType", + "rdfs:comment" : "Text descriptor of the shipping environment of a biospecimen.", + "@type" : "rdfs:Class", + "sms:displayName" : "ShippingConditionType" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:AntibioticUse", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:No" + }, { + "@id" : "bts:unknown" + }, { + "@id" : "bts:Yes-withinlastmonthh" + }, { + "@id" : "bts:Yes-withinlast1-6months" + }, { + "@id" : "bts:Yes-over6monthsago" + } ], + "rdfs:label" : "AntibioticUse", + "rdfs:comment" : "Antibiotic use", + "@type" : "rdfs:Class", + "sms:displayName" : "AntibioticUse" + }, { + "@id" : "bts:ERStatus", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "ERStatus", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "ERStatus", + "sms:required" : "sms:false" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:MolecularConsequence", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:TFBindingSiteVariant" + }, { + "@id" : "bts:TranscriptAmplification" + }, { + "@id" : "bts:SpliceRegionVariant" + }, { + "@id" : "bts:DownstreamGeneVariant" + }, { + "@id" : "bts:5PrimeUTRVariant" + }, { + "@id" : "bts:SpliceDonorVariant" + }, { + "@id" : "bts:SpliceAcceptorVariant" + }, { + "@id" : "bts:StopGain" + }, { + "@id" : "bts:StopRetainedVariant" + }, { + "@id" : "bts:TFBSAmplification" + }, { + "@id" : "bts:3PrimeUTRVariant" + }, { + "@id" : "bts:UpstreamGeneVariant" + }, { + "@id" : "bts:IntergenicVariant" + }, { + "@id" : "bts:RegulatoryRegionAblation" + }, { + "@id" : "bts:NMDTranscriptVariant" + }, { + "@id" : "bts:TranscriptAblation" + }, { + "@id" : "bts:Non-codingTranscriptExonVariant" + }, { + "@id" : "bts:SynonymousVariant" + }, { + "@id" : "bts:RegulatoryRegionVariant" + }, { + "@id" : "bts:StopLost" + }, { + "@id" : "bts:MaturemiRNAVariant" + }, { + "@id" : "bts:InframeInsertion" + }, { + "@id" : "bts:InframeDeletion" + }, { + "@id" : "bts:ProteinAlteringVariant" + }, { + "@id" : "bts:IncompleteTerminalCodonVariant" + }, { + "@id" : "bts:TFBSAblation" + }, { + "@id" : "bts:IntronVariant" + }, { + "@id" : "bts:CodingSequenceVariant" + }, { + "@id" : "bts:MissenseVariant" + }, { + "@id" : "bts:FrameshiftVariant" + }, { + "@id" : "bts:Non-codingTranscriptVariant" + }, { + "@id" : "bts:FeatureTruncation" + }, { + "@id" : "bts:RegulatoryRegionAmplification" + }, { + "@id" : "bts:StartLost" + }, { + "@id" : "bts:FeatureElongation" + } ], + "rdfs:label" : "MolecularConsequence", + "rdfs:comment" : "The text term used to describe the molecular consequence of genetic variation. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", + "@type" : "rdfs:Class", + "sms:displayName" : "MolecularConsequence" + }, { + "@id" : "bts:SampleCollectionYear", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "SampleCollectionYear", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "SampleCollectionYear", + "sms:required" : "sms:false" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:WorkingDistanceUnit", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:cm" + }, { + "@id" : "bts:mm" + }, { + "@id" : "bts:µm" + }, { + "@id" : "bts:nm" + }, { + "@id" : "bts:Å" + } ], + "rdfs:label" : "WorkingDistanceUnit", + "rdfs:comment" : "The units of the working distance. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", + "@type" : "rdfs:Class", + "sms:displayName" : "WorkingDistanceUnit" + }, { + "@id" : "bts:PriorSitesofRadiation", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "PriorSitesofRadiation", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "PriorSitesofRadiation", + "sms:required" : "sms:false" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:AlcoholHistory", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:Yes" + }, { + "@id" : "bts:No" + }, { + "@id" : "bts:unknown" + }, { + "@id" : "bts:NotReported" + } ], + "rdfs:label" : "AlcoholHistory", + "rdfs:comment" : "A response to a question that asks whether the participant has consumed at least 12 drinks of any kind of alcoholic beverage in their lifetime.", + "@type" : "rdfs:Class", + "sms:displayName" : "AlcoholHistory" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:AgeIsObfuscated", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:True" + }, { + "@id" : "bts:False" + } ], + "rdfs:label" : "AgeIsObfuscated", + "rdfs:comment" : "The age of the patient has been modified for compliance reasons. The actual age differs from what is reported. Other date intervals for this patient may also be modified.", + "@type" : "rdfs:Class", + "sms:displayName" : "AgeIsObfuscated" + }, { + "@id" : "bts:TargetName", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "TargetName", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "TargetName", + "sms:required" : "sms:false" + }, { + "@id" : "bts:SecondExon", + "@type" : "rdfs:Class", + "rdfs:comment" : "The second exon number involved in molecular variation. If a specific genetic variant is being reported, this property can be used to capture the second exon where that variant is located. This property is typically used for a translocation where two different locations are involved in the variation.", + "rdfs:label" : "SecondExon", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "SecondExon", + "sms:required" : "sms:false" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:HistoneFamily", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:unknown" + }, { + "@id" : "bts:NotReported" + }, { + "@id" : "bts:H1" + }, { + "@id" : "bts:H2A" + }, { + "@id" : "bts:H2B" + }, { + "@id" : "bts:H3" + }, { + "@id" : "bts:H4" + } ], + "rdfs:label" : "HistoneFamily", + "rdfs:comment" : "The text term used to describe the family, or classification of a group of basic proteins found in chromatin, called histones.", + "@type" : "rdfs:Class", + "sms:displayName" : "HistoneFamily" + }, { + "@id" : "bts:BloodTestNormalRangeUpper", + "@type" : "rdfs:Class", + "rdfs:comment" : "Numeric value used to describe the upper limit of the normal range used to describe a healthy individual at the institution where the test was completed.", + "rdfs:label" : "BloodTestNormalRangeUpper", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "BloodTestNormalRangeUpper", + "sms:required" : "sms:false" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:ScATACseqLibraryLayout", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ ], + "rdfs:label" : "ScATACseqLibraryLayout", + "rdfs:comment" : "Sequencing read type", + "@type" : "rdfs:Class", + "sms:displayName" : "ScATACseqLibraryLayout" + }, { + "@id" : "bts:Immunosuppression", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "Immunosuppression", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "Immunosuppression", + "sms:required" : "sms:false" + }, { + "@id" : "bts:Authors", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "Authors", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "Authors", + "sms:required" : "sms:false" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:OvarianCancerPlatinumStatus", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:unknown" + }, { + "@id" : "bts:Datanotavailable" + }, { + "@id" : "bts:Platinum-refractory" + }, { + "@id" : "bts:Platinum-sensitive" + }, { + "@id" : "bts:Platinum-resistant" + } ], + "rdfs:label" : "OvarianCancerPlatinumStatus", + "rdfs:comment" : "Text term to indicate the status of treatment with platinum in participant with ovarian cancer", + "@type" : "rdfs:Class", + "sms:displayName" : "OvarianCancerPlatinumStatus" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:ScATACseqRead3", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:CellBarcodeandDNAInsert" + }, { + "@id" : "bts:SampleIndexandDNAInsert" + }, { + "@id" : "bts:DNAInsert" + }, { + "@id" : "bts:SampleIndex" + }, { + "@id" : "bts:CellBarcode" + } ], + "rdfs:label" : "ScATACseqRead3", + "rdfs:comment" : "Read 3 content description", + "@type" : "rdfs:Class", + "sms:displayName" : "ScATACseqRead3" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:AlcoholIntensity", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:unknown" + }, { + "@id" : "bts:NotReported" + }, { + "@id" : "bts:Drinker" + }, { + "@id" : "bts:HeavyDrinker" + }, { + "@id" : "bts:LifelongNon-Drinker" + }, { + "@id" : "bts:Non-Drinker" + }, { + "@id" : "bts:OccasionalDrinker" + } ], + "rdfs:label" : "AlcoholIntensity", + "rdfs:comment" : "Category to describe the patient's current level of alcohol use as self-reported by the patient.", + "@type" : "rdfs:Class", + "sms:displayName" : "AlcoholIntensity" + }, { + "@id" : "bts:Transcript", + "@type" : "rdfs:Class", + "rdfs:comment" : "Alphanumeric value used to describe the transcript of a specific genetic variant. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", + "rdfs:label" : "Transcript", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "Transcript", + "sms:required" : "sms:false" + }, { + "@id" : "bts:EducationLevel", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "EducationLevel", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "EducationLevel", + "sms:required" : "sms:false" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:DimensionOrder", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:XYZCT" + }, { + "@id" : "bts:XYZTC" + }, { + "@id" : "bts:XYCTZ" + }, { + "@id" : "bts:XYCZT" + }, { + "@id" : "bts:XYTZC" + }, { + "@id" : "bts:ZYX" + } ], + "rdfs:label" : "DimensionOrder", + "rdfs:comment" : "The order in which the individual planes of data are interleaved.", + "@type" : "rdfs:Class", + "sms:displayName" : "DimensionOrder" + }, { + "@id" : "bts:Parity", + "@type" : "rdfs:Class", + "rdfs:comment" : "Number of pregnancies carried over the threshold of viability", + "rdfs:label" : "Parity", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "Parity", + "sms:required" : "sms:false" + }, { + "@id" : "bts:AlcoholDaysPerWeek", + "@type" : "rdfs:Class", + "rdfs:comment" : "Numeric value used to describe the average number of days each week that a person consumes an alcoholic beverage.", + "rdfs:label" : "AlcoholDaysPerWeek", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "AlcoholDaysPerWeek", + "sms:required" : "sms:false" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:AnalyteType", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:TissueSectionAnalyte" + }, { + "@id" : "bts:SerumAnalyte" + }, { + "@id" : "bts:PBMCsorPlasmaorSerumAnalyte" + }, { + "@id" : "bts:Plasma" + }, { + "@id" : "bts:TissueBlockAnalyte" + }, { + "@id" : "bts:cfDNAAnalyte" + }, { + "@id" : "bts:DNAAnalyte" + }, { + "@id" : "bts:RNAAnalyte" + }, { + "@id" : "bts:cDNALibrariesAnalyte" + }, { + "@id" : "bts:PBMCs" + }, { + "@id" : "bts:TotalRNAAnalyte" + } ], + "rdfs:label" : "AnalyteType", + "rdfs:comment" : "The kind of molecular specimen analyte: a molecular derivative (I.e. RNA / DNA / Protein Lysate) obtained from a specimen", + "@type" : "rdfs:Class", + "sms:displayName" : "AnalyteType" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:FOVYUnit", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:cm" + }, { + "@id" : "bts:mm" + }, { + "@id" : "bts:µm" + }, { + "@id" : "bts:nm" + }, { + "@id" : "bts:Å" + } ], + "rdfs:label" : "FOVYUnit", + "rdfs:comment" : "Field of view Y dimension units. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", + "@type" : "rdfs:Class", + "sms:displayName" : "FOVYUnit" + }, { + "@id" : "bts:AgeatDiagnosis", + "@type" : "rdfs:Class", + "rdfs:comment" : "Age at the time of diagnosis expressed in number of days since birth.", + "rdfs:label" : "AgeatDiagnosis", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "AgeatDiagnosis", + "sms:required" : "sms:false" + }, { + "@id" : "bts:Cytoband", + "@type" : "rdfs:Class", + "rdfs:comment" : "Alphanumeric value used to describe the cytoband or chromosomal location targeted or included in molecular analysis. If a specific genetic variant is being reported, this property can be used to capture the cytoband where the variant is located. Format: [chromosome][chromosome arm].[band+sub-bands]. Example: 17p13.1. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", + "rdfs:label" : "Cytoband", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "Cytoband", + "sms:required" : "sms:false" + }, { + "@id" : "bts:PeaksCallingSoftware", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "PeaksCallingSoftware", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "PeaksCallingSoftware", + "sms:required" : "sms:false" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:SecondhandSmokeasChild", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:Yes" + }, { + "@id" : "bts:No" + }, { + "@id" : "bts:unknown" + }, { + "@id" : "bts:NotReported" + } ], + "rdfs:label" : "SecondhandSmokeasChild", + "rdfs:comment" : "The text term used to indicate whether the patient was exposed to secondhand smoke as a child.", + "@type" : "rdfs:Class", + "sms:displayName" : "SecondhandSmokeasChild" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:PhysicalSizeXUnit", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:cm" + }, { + "@id" : "bts:mm" + }, { + "@id" : "bts:µm" + }, { + "@id" : "bts:nm" + }, { + "@id" : "bts:Å" + } ], + "rdfs:label" : "PhysicalSizeXUnit", + "rdfs:comment" : "The units of the physical size of a pixel. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", + "@type" : "rdfs:Class", + "sms:displayName" : "PhysicalSizeXUnit" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:CancerAssociatedGeneMutations", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:PMS2mutation" + }, { + "@id" : "bts:POT1mutation" + }, { + "@id" : "bts:TP53mutation" + }, { + "@id" : "bts:H3K27Mmutation" + }, { + "@id" : "bts:SMARCA4mutation" + }, { + "@id" : "bts:SDHDmutation" + }, { + "@id" : "bts:BRCA1mutation" + }, { + "@id" : "bts:CHKmutation" + }, { + "@id" : "bts:RB1mutation" + }, { + "@id" : "bts:H3G34R/Vmutation" + }, { + "@id" : "bts:SDHCmutation" + }, { + "@id" : "bts:SDHBmutation" + }, { + "@id" : "bts:TSC2mutation" + }, { + "@id" : "bts:NotReported" + }, { + "@id" : "bts:HOXB13mutation" + }, { + "@id" : "bts:NF1mutation" + }, { + "@id" : "bts:VHLmutation" + }, { + "@id" : "bts:BAP1mutation" + }, { + "@id" : "bts:SETD2mutation" + }, { + "@id" : "bts:BRCA1and2mutation" + }, { + "@id" : "bts:unknown" + }, { + "@id" : "bts:PTENmutation" + }, { + "@id" : "bts:NotApplicable" + }, { + "@id" : "bts:STK11mutation" + }, { + "@id" : "bts:PAX5mutation" + }, { + "@id" : "bts:RETmutation" + }, { + "@id" : "bts:NF2mutation" + }, { + "@id" : "bts:ETV6mutation" + }, { + "@id" : "bts:PolDmutation" + }, { + "@id" : "bts:IKZF1mutation" + }, { + "@id" : "bts:PALB2mutation" + }, { + "@id" : "bts:SDHAF2mutation" + }, { + "@id" : "bts:EGFRmutation" + }, { + "@id" : "bts:PDGFRAmutation" + }, { + "@id" : "bts:ARFmutation" + }, { + "@id" : "bts:PTCHmutation" + }, { + "@id" : "bts:PRKAR1Amutation" + }, { + "@id" : "bts:MUTYHmutation" + }, { + "@id" : "bts:MSH6mutation" + }, { + "@id" : "bts:CDKN2Aandp14ARFmutation" + }, { + "@id" : "bts:GREM1mutation" + }, { + "@id" : "bts:MAXmutation" + }, { + "@id" : "bts:FHmutation" + }, { + "@id" : "bts:PHOX2Bmutation" + }, { + "@id" : "bts:CDH1mutation" + }, { + "@id" : "bts:MSH2mutation" + }, { + "@id" : "bts:MLH1mutation" + }, { + "@id" : "bts:METmutation" + }, { + "@id" : "bts:ATRXmutation" + }, { + "@id" : "bts:KRASmutation" + }, { + "@id" : "bts:KITmutation" + }, { + "@id" : "bts:PolEmutation" + }, { + "@id" : "bts:TSC1mutation" + }, { + "@id" : "bts:BLMmutation" + }, { + "@id" : "bts:ATMmutation" + }, { + "@id" : "bts:ACVR1mutation" + }, { + "@id" : "bts:FLCNmutation" + }, { + "@id" : "bts:MEN1mutation" + }, { + "@id" : "bts:TMEM127mutation" + }, { + "@id" : "bts:BRAFmutation" + }, { + "@id" : "bts:ROS1mutation" + }, { + "@id" : "bts:SMAD4mutation" + }, { + "@id" : "bts:ALKmutation" + }, { + "@id" : "bts:BMPR1Amutation" + }, { + "@id" : "bts:APCmutation" + }, { + "@id" : "bts:BRCA2mutation" + }, { + "@id" : "bts:SMARCB1mutation" + }, { + "@id" : "bts:CDKN2Amutation" + }, { + "@id" : "bts:RAD51Cmutation" + }, { + "@id" : "bts:p14ARFmutation" + } ], + "rdfs:label" : "CancerAssociatedGeneMutations", + "rdfs:comment" : "Type of inherited germline or other gene mutations that confers heightened susceptibility to cancer identified in patient history", + "@type" : "rdfs:Class", + "sms:displayName" : "CancerAssociatedGeneMutations" + }, { + "@id" : "bts:FOVnumber", + "@type" : "rdfs:Class", + "rdfs:comment" : "Index of FOV (as it pertains to its sequence order). 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Do not include data related to research assay outputs here.", + "rdfs:label" : "CellCount", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "CellCount", + "sms:required" : "sms:false" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:AnaplasiaPresentType", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:unknown" + }, { + "@id" : "bts:NotReported" + }, { + "@id" : "bts:Equivocal" + }, { + "@id" : "bts:Absent" + }, { + "@id" : "bts:Present" + }, { + "@id" : "bts:Diffuse" + }, { + "@id" : "bts:Focal" + }, { + "@id" : "bts:Sclerosis" + } ], + "rdfs:label" : "AnaplasiaPresentType", + "rdfs:comment" : "The text term used to describe the morphologic findings indicating the presence of a malignant cellular infiltrate characterized by the presence of large pleomorphic cells, necrosis, and high mitotic activity in a tissue 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Do not include data related to research assay outputs here.", + "rdfs:label" : "AAChange", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "AAChange", + "sms:required" : "sms:false" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:NucleicAcidSource", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:SingleCell" + }, { + "@id" : "bts:BulkWholeCell" + }, { + "@id" : "bts:SingleNucleus" + }, { + "@id" : "bts:BulkNuclei" + } ], + "rdfs:label" : "NucleicAcidSource", + "rdfs:comment" : "The source of the input nucleic molecule", + "@type" : "rdfs:Class", + "sms:displayName" : "NucleicAcidSource" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:ExtentofTumorResection", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:Minor" + }, { + "@id" : "bts:OpenBiopsy" + }, { + "@id" : "bts:NotReported" + }, { + "@id" : "bts:GrossTotalResection" + }, { + "@id" : "bts:unknown" + }, { + "@id" : "bts:NotApplicable" + }, { + "@id" : "bts:Segmental" + }, { + "@id" : "bts:NTR" + }, { + "@id" : "bts:Suboptimaldebulking" + }, { + "@id" : "bts:SubtotalResection" + }, { + "@id" : "bts:Other" + }, { + "@id" : "bts:Partialdebulking" + }, { + "@id" : "bts:Suboptimal" + }, { + "@id" : "bts:Optimaldebulking" + }, { + "@id" : "bts:ExtensiveSubtotal" + } ], + "rdfs:label" : "ExtentofTumorResection", + "rdfs:comment" : "The degree to which the lesion has been cut out, or resected.", + "@type" : "rdfs:Class", + "sms:displayName" : "ExtentofTumorResection" + }, { + "@id" : "bts:TimepointLabel", + "@type" : "rdfs:Class", + "rdfs:comment" : "Label to identify the time point at which the clinical data or biospecimen was obtained (e.g. Baseline, End of Treatment, Overall survival, Final). NO PHI/PII INFORMATION IS ALLOWED.", + "rdfs:label" : "TimepointLabel", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "TimepointLabel", + "sms:required" : "sms:false" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:Ploidy", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:unknown" + }, { + "@id" : "bts:NotReported" + }, { + "@id" : "bts:Aneuploid" + }, { + "@id" : "bts:Diploid" + }, { + "@id" : "bts:Hyperdiploid" + }, { + "@id" : "bts:Hypodiploid" + }, { + "@id" : "bts:NearDiploid" + }, { + "@id" : "bts:Tetraploid" + } ], + "rdfs:label" : "Ploidy", + "rdfs:comment" : "Text term used to describe the number of sets of homologous chromosomes.", + "@type" : "rdfs:Class", + "sms:displayName" : "Ploidy" + }, { + "@id" : "bts:PortionWeight", + "@type" : "rdfs:Class", + "rdfs:comment" : "Numeric value that represents the sample portion weight, measured in milligrams.", + "rdfs:label" : "PortionWeight", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "PortionWeight", + "sms:required" : "sms:false" + }, { + "@id" : "bts:DaystoProgression", + "@type" : "rdfs:Class", + "rdfs:comment" : "Number of days between the date used for index and the date the patient's disease progressed.", + "rdfs:label" : "DaystoProgression", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "DaystoProgression", + "sms:required" : "sms:false" + }, { + "@id" : "bts:RRIDidentifier", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "RRIDidentifier", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "RRIDidentifier", + "sms:required" : "sms:false" + }, { + "@id" : "bts:ClassBRCA2", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "ClassBRCA2", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "ClassBRCA2", + "sms:required" : "sms:false" + }, { + "@id" : "bts:WhitelistCellBarcodeFileLink", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "WhitelistCellBarcodeFileLink", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "WhitelistCellBarcodeFileLink", + "sms:required" : "sms:false" + }, { + "@id" : "bts:StartDaysfromIndex", + "@type" : "rdfs:Class", + "rdfs:comment" : "Number of days from the date of birth (index date) to the date of an event (e.g. exposure to environmental factor, treatment start, etc.). If not applicable please enter 'Not Applicable'", + "rdfs:label" : "StartDaysfromIndex", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "StartDaysfromIndex", + "sms:required" : "sms:false" + }, { + "@id" : "bts:Ecigvapetimesperday", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "Ecigvapetimesperday", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "Ecigvapetimesperday", + "sms:required" : "sms:false" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:FamilyMemberVitalStatusIndicator", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:Yes" + }, { + "@id" : "bts:No" + }, { + "@id" : "bts:unknown" + } ], + "rdfs:label" : "FamilyMemberVitalStatusIndicator", + "rdfs:comment" : "The response indicates whether the family member of the patient with a history of cancer is alive. (Extension to GDC attributes in Family History Tier 1)", + "@type" : "rdfs:Class", + "sms:displayName" : "FamilyMemberVitalStatusIndicator" + }, { + "@id" : "bts:SectionThicknessValue", + "@type" : "rdfs:Class", + "rdfs:comment" : "Numeric value to describe the thickness of a slice to tissue taken from a biospecimen, measured in microns (um).", + "rdfs:label" : "SectionThicknessValue", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "SectionThicknessValue", + "sms:required" : "sms:false" + }, { + "@id" : "bts:SoftwareandVersion", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "SoftwareandVersion", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "SoftwareandVersion", + "sms:required" : "sms:false" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:KnownGeneticPredispositionMutation", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:Yes" + }, { + "@id" : "bts:No" + }, { + "@id" : "bts:unknown" + } ], + "rdfs:label" : "KnownGeneticPredispositionMutation", + "rdfs:comment" : "A yes/no/unknown indicator to identify whether there is a known genetic predisposition mutation present in the patient.", + "@type" : "rdfs:Class", + "sms:displayName" : "KnownGeneticPredispositionMutation" + }, { + "@id" : "bts:BiospecimenDimension1", + "@type" : "rdfs:Class", + "rdfs:comment" : "First dimension of tissue fragment (number, up to one decimal place) measured in units as defined by the \"\"dimensions_unit\"\" CDE", + "rdfs:label" : "BiospecimenDimension1", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "BiospecimenDimension1", + "sms:required" : "sms:false" + }, { + "@id" : "bts:NucleiBarcodeLength", + "@type" : "rdfs:Class", + "rdfs:comment" : "Nuclei Barcode Length", + "rdfs:label" : "NucleiBarcodeLength", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "NucleiBarcodeLength", + "sms:required" : "sms:false" + }, { + "@id" : "bts:HER2BreastCarcinomaCopyNumberTotal", + "@type" : "rdfs:Class", + "rdfs:comment" : "Result of HER2 Copy Number testing (in a participant with breast cancer), expressed as a range of values.", + "rdfs:label" : "HER2BreastCarcinomaCopyNumberTotal", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "HER2BreastCarcinomaCopyNumberTotal", + "sms:required" : "sms:false" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:MammaprintRiskGroup", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:unknown" + }, { + "@id" : "bts:Datanotavailable" + }, { + "@id" : "bts:Highrisk" + }, { + "@id" : "bts:Intermediaterisk" + }, { + "@id" : "bts:Lowrisk" + } ], + "rdfs:label" : "MammaprintRiskGroup", + "rdfs:comment" : "Text term that represents the risk group for breast cancer as determined by assessment of the MammaPrint test.", + "@type" : "rdfs:Class", + "sms:displayName" : "MammaprintRiskGroup" + }, { + "@id" : "bts:Height", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "Height", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "Height", + "sms:required" : "sms:false" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:Race", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:true", + "schema:rangeIncludes" : [ { + "@id" : "bts:americanindianoralaskanative" + }, { + "@id" : "bts:NotReported" + }, { + "@id" : "bts:white" + }, { + "@id" : "bts:unknown" + }, { + "@id" : "bts:blackorafricanamerican" + }, { + "@id" : "bts:notallowedtocollect" + }, { + "@id" : "bts:asian" + }, { + "@id" : "bts:Other" + }, { + "@id" : "bts:nativehawaiianorotherpacificislander" + } ], + "rdfs:label" : "Race", + "rdfs:comment" : "An arbitrary classification of a taxonomic group that is a division of a species. It usually arises as a consequence of geographical isolation withina a species and is characterized by shared heredity, physical attributes and behavior, and in the case of humans, by common history, nationality, or geographic distribution.", + "@type" : "rdfs:Class", + "sms:displayName" : "Race" + }, { + "@id" : "bts:BiospecimenDimension3", + "@type" : "rdfs:Class", + "rdfs:comment" : "Third dimension of tissue fragment (number, up to one decimal place) measured in units as defined by the \"\"dimensions_unit\"\" CDE", + "rdfs:label" : "BiospecimenDimension3", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "BiospecimenDimension3", + "sms:required" : "sms:false" + }, { + "@id" : "bts:OncotypeScore", + "@type" : "rdfs:Class", + "rdfs:comment" : "OncotypeDX recurrence score", + "rdfs:label" : "OncotypeScore", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "OncotypeScore", + "sms:required" : "sms:false" + }, { + "@id" : "bts:InputCellsandNuclei", + "@type" : "rdfs:Class", + "rdfs:comment" : "Number of cells and number of nuclei input; 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If a specific genetic variant is being reported, this property can be used to capture the chromosome where that variant is located. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", + "@type" : "rdfs:Class", + "sms:displayName" : "Chromosome" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:MutationalSignatures", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:Signature19" + }, { + "@id" : "bts:Signature1A" + }, { + "@id" : "bts:Iggenehypermutation" + }, { + "@id" : "bts:alteredactivityoftheerror-pronepolymerasePOLε(POLE)" + }, { + "@id" : "bts:Signature3" + }, { + "@id" : "bts:Signature20" + }, { + "@id" : "bts:NotReported" + }, { + "@id" : "bts:Signature17" + }, { + "@id" : "bts:Signature4" + }, { + "@id" : "bts:Datanotavailable" + }, { + "@id" : "bts:Signature5" + }, { + "@id" : "bts:Signature9" + }, { + "@id" : "bts:unknown" + }, { + "@id" : "bts:Signature14" + }, { + "@id" : "bts:Signature13" + }, { + "@id" : "bts:NotApplicable" + }, { + "@id" : "bts:Signature12" + }, { + "@id" : "bts:Signature8" + }, { + "@id" : "bts:ActivationInducedDeaminases(AID)associatedmutations" + }, { + "@id" : "bts:Signature7" + }, { + "@id" : "bts:microsatelliteinstability(additionsanddeletions)" + }, { + "@id" : "bts:AlkylatingAgents(Temozolomide)inducedmutations" + }, { + "@id" : "bts:localizedsubstitutionhypermutation(kataegis)" + }, { + "@id" : "bts:Signature16" + }, { + "@id" : "bts:Signature6" + }, { + "@id" : "bts:Other" + }, { + "@id" : "bts:Signature21" + }, { + "@id" : "bts:DNAMMRDeficiency" + }, { + "@id" : "bts:APOBECenzymesassociatedmutations" + }, { + "@id" : "bts:Tobaccouseassociatedmutations" + }, { + "@id" : "bts:transcriptionalstrandbias" + }, { + "@id" : "bts:Signature1B" + }, { + "@id" : "bts:Signature10" + }, { + "@id" : "bts:UVlightinducedmutations" + }, { + "@id" : "bts:Signature18" + }, { + "@id" : "bts:Signature11" + }, { + "@id" : "bts:Signature2" + }, { + "@id" : "bts:methylatedCpGsequencesmutagenesis(deaminationof5-methyl-cytosine)" + }, { + "@id" : "bts:Signature15" + }, { + "@id" : "bts:ageofcancerdiagnosis" + } ], + "rdfs:label" : "MutationalSignatures", + "rdfs:comment" : "Mutational signatures identified in the patient, includes signatures linked to selected exogenous carcinogens, endogenous and enzymatic modification of DNA or defective DNA repair. Note: Include only outputs of tests that were completed clinically for the participant and only include data from a diagnostic array that was completed prior to research sequencing was done. 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] } \ No newline at end of file