From 33151690749bbcd62f99034afc05ab11b8187a87 Mon Sep 17 00:00:00 2001 From: github-actions Date: Fri, 8 Sep 2023 23:36:09 +0000 Subject: [PATCH] Build jsonld --- GF.jsonld | 633 ++++++++++++++++++++++++++++++++++++++++++++++++++++-- 1 file changed, 612 insertions(+), 21 deletions(-) diff --git a/GF.jsonld b/GF.jsonld index f22f2f0..35d310d 100644 --- a/GF.jsonld +++ b/GF.jsonld @@ -472,12 +472,34 @@ "@id" : "bts:NucleicAcidSource" }, { "@id" : "bts:LibraryConstructionMethod" + }, { + "@id" : "bts:LibrarySelectionMethod" + }, { + "@id" : "bts:LibraryLayout" + }, { + "@id" : "bts:LibraryPreparationKitName" + }, { + "@id" : "bts:LibraryPreparationKitVendor" + }, { + "@id" : "bts:LibraryPreparationKitVersion" }, { "@id" : "bts:ReadIndicator" + }, { + "@id" : "bts:ReadLength" }, { "@id" : "bts:Read1" }, { "@id" : "bts:Read2" + }, { + "@id" : "bts:TargetDepth" + }, { + "@id" : "bts:AdapterName" + }, { + "@id" : "bts:AdapterSequence" + }, { + "@id" : "bts:BatchID" + }, { + "@id" : "bts:LaneNumber" }, { "@id" : "bts:TechnicalReplicateGroup" }, { @@ -633,12 +655,34 @@ "@id" : "bts:NucleicAcidSource" }, { "@id" : "bts:LibraryConstructionMethod" + }, { + "@id" : "bts:LibrarySelectionMethod" + }, { + "@id" : "bts:LibraryLayout" + }, { + "@id" : "bts:LibraryPreparationKitName" + }, { + "@id" : "bts:LibraryPreparationKitVendor" + }, { + "@id" : "bts:LibraryPreparationKitVersion" }, { "@id" : "bts:ReadIndicator" + }, { + "@id" : "bts:ReadLength" }, { "@id" : "bts:Read1" }, { "@id" : "bts:Read2" + }, { + "@id" : "bts:TargetDepth" + }, { + "@id" : "bts:AdapterName" + }, { + "@id" : "bts:AdapterSequence" + }, { + "@id" : "bts:BatchID" + }, { + "@id" : "bts:LaneNumber" }, { "@id" : "bts:TechnicalReplicateGroup" }, { @@ -702,12 +746,34 @@ "@id" : "bts:NucleicAcidSource" }, { "@id" : "bts:LibraryConstructionMethod" + }, { + "@id" : "bts:LibrarySelectionMethod" + }, { + "@id" : "bts:LibraryLayout" + }, { + "@id" : "bts:LibraryPreparationKitName" + }, { + "@id" : "bts:LibraryPreparationKitVendor" + }, { + "@id" : "bts:LibraryPreparationKitVersion" }, { "@id" : "bts:ReadIndicator" + }, { + "@id" : "bts:ReadLength" }, { "@id" : "bts:Read1" }, { "@id" : "bts:Read2" + }, { + "@id" : "bts:TargetDepth" + }, { + "@id" : "bts:AdapterName" + }, { + "@id" : "bts:AdapterSequence" + }, { + "@id" : "bts:BatchID" + }, { + "@id" : "bts:LaneNumber" }, { "@id" : "bts:TechnicalReplicateGroup" }, { @@ -730,8 +796,6 @@ "@id" : "bts:SingleNucleusBuffer" }, { "@id" : "bts:TranspositionReaction" - }, { - "@id" : "bts:ScATACseqLibraryLayout" }, { "@id" : "bts:NucleusIdentifier" }, { @@ -872,12 +936,34 @@ "@id" : "bts:NucleicAcidSource" }, { "@id" : "bts:LibraryConstructionMethod" + }, { + "@id" : "bts:LibrarySelectionMethod" + }, { + "@id" : "bts:LibraryLayout" + }, { + "@id" : "bts:LibraryPreparationKitName" + }, { + "@id" : "bts:LibraryPreparationKitVendor" + }, { + "@id" : "bts:LibraryPreparationKitVersion" }, { "@id" : "bts:ReadIndicator" + }, { + "@id" : "bts:ReadLength" }, { "@id" : "bts:Read1" }, { "@id" : "bts:Read2" + }, { + "@id" : "bts:TargetDepth" + }, { + "@id" : "bts:AdapterName" + }, { + "@id" : "bts:AdapterSequence" + }, { + "@id" : "bts:BatchID" + }, { + "@id" : "bts:LaneNumber" }, { "@id" : "bts:TechnicalReplicateGroup" }, { @@ -900,8 +986,6 @@ "@id" : "bts:SingleNucleusBuffer" }, { "@id" : "bts:TranspositionReaction" - }, { - "@id" : "bts:ScATACseqLibraryLayout" }, { "@id" : "bts:NucleusIdentifier" }, { @@ -956,7 +1040,7 @@ "sms:required" : "sms:false", "sms:requiresComponent" : "", "rdfs:label" : "Sequencing", - "rdfs:comment" : "TBD", + "rdfs:comment" : "Base template for some type of sequencing data, for which below properties are relevant/in common.", "@type" : "rdfs:Class", "sms:requiresDependency" : [ { "@id" : "bts:Component" @@ -976,12 +1060,34 @@ "@id" : "bts:NucleicAcidSource" }, { "@id" : "bts:LibraryConstructionMethod" + }, { + "@id" : "bts:LibrarySelectionMethod" + }, { + "@id" : "bts:LibraryLayout" + }, { + "@id" : "bts:LibraryPreparationKitName" + }, { + "@id" : "bts:LibraryPreparationKitVendor" + }, { + "@id" : "bts:LibraryPreparationKitVersion" }, { "@id" : "bts:ReadIndicator" + }, { + "@id" : "bts:ReadLength" }, { "@id" : "bts:Read1" }, { "@id" : "bts:Read2" + }, { + "@id" : "bts:TargetDepth" + }, { + "@id" : "bts:AdapterName" + }, { + "@id" : "bts:AdapterSequence" + }, { + "@id" : "bts:BatchID" + }, { + "@id" : "bts:LaneNumber" }, { "@id" : "bts:TechnicalReplicateGroup" } ], @@ -1017,12 +1123,34 @@ "@id" : "bts:NucleicAcidSource" }, { "@id" : "bts:LibraryConstructionMethod" + }, { + "@id" : "bts:LibrarySelectionMethod" + }, { + "@id" : "bts:LibraryLayout" + }, { + "@id" : "bts:LibraryPreparationKitName" + }, { + "@id" : "bts:LibraryPreparationKitVendor" + }, { + "@id" : "bts:LibraryPreparationKitVersion" }, { "@id" : "bts:ReadIndicator" + }, { + "@id" : "bts:ReadLength" }, { "@id" : "bts:Read1" }, { "@id" : "bts:Read2" + }, { + "@id" : "bts:TargetDepth" + }, { + "@id" : "bts:AdapterName" + }, { + "@id" : "bts:AdapterSequence" + }, { + "@id" : "bts:BatchID" + }, { + "@id" : "bts:LaneNumber" }, { "@id" : "bts:TechnicalReplicateGroup" }, { @@ -1043,10 +1171,10 @@ "@id" : "bts:EndBias" }, { "@id" : "bts:ScRNAseqWorkflowType" - }, { - "@id" : "bts:WorkflowVersion" }, { "@id" : "bts:ScRNAseqWorkflowParametersDescription" + }, { + "@id" : "bts:WorkflowVersion" }, { "@id" : "bts:WorkflowLink" }, { @@ -1113,12 +1241,34 @@ "@id" : "bts:NucleicAcidSource" }, { "@id" : "bts:LibraryConstructionMethod" + }, { + "@id" : "bts:LibrarySelectionMethod" + }, { + "@id" : "bts:LibraryLayout" + }, { + "@id" : "bts:LibraryPreparationKitName" + }, { + "@id" : "bts:LibraryPreparationKitVendor" + }, { + "@id" : "bts:LibraryPreparationKitVersion" }, { "@id" : "bts:ReadIndicator" + }, { + "@id" : "bts:ReadLength" }, { "@id" : "bts:Read1" }, { "@id" : "bts:Read2" + }, { + "@id" : "bts:TargetDepth" + }, { + "@id" : "bts:AdapterName" + }, { + "@id" : "bts:AdapterSequence" + }, { + "@id" : "bts:BatchID" + }, { + "@id" : "bts:LaneNumber" }, { "@id" : "bts:TechnicalReplicateGroup" }, { @@ -1170,12 +1320,34 @@ "@id" : "bts:NucleicAcidSource" }, { "@id" : "bts:LibraryConstructionMethod" + }, { + "@id" : "bts:LibrarySelectionMethod" + }, { + "@id" : "bts:LibraryLayout" + }, { + "@id" : "bts:LibraryPreparationKitName" + }, { + "@id" : "bts:LibraryPreparationKitVendor" + }, { + "@id" : "bts:LibraryPreparationKitVersion" }, { "@id" : "bts:ReadIndicator" + }, { + "@id" : "bts:ReadLength" }, { "@id" : "bts:Read1" }, { "@id" : "bts:Read2" + }, { + "@id" : "bts:TargetDepth" + }, { + "@id" : "bts:AdapterName" + }, { + "@id" : "bts:AdapterSequence" + }, { + "@id" : "bts:BatchID" + }, { + "@id" : "bts:LaneNumber" }, { "@id" : "bts:TechnicalReplicateGroup" }, { @@ -1198,8 +1370,6 @@ "@id" : "bts:SingleNucleusBuffer" }, { "@id" : "bts:TranspositionReaction" - }, { - "@id" : "bts:ScATACseqLibraryLayout" }, { "@id" : "bts:NucleusIdentifier" }, { @@ -1286,12 +1456,34 @@ "@id" : "bts:NucleicAcidSource" }, { "@id" : "bts:LibraryConstructionMethod" + }, { + "@id" : "bts:LibrarySelectionMethod" + }, { + "@id" : "bts:LibraryLayout" + }, { + "@id" : "bts:LibraryPreparationKitName" + }, { + "@id" : "bts:LibraryPreparationKitVendor" + }, { + "@id" : "bts:LibraryPreparationKitVersion" }, { "@id" : "bts:ReadIndicator" + }, { + "@id" : "bts:ReadLength" }, { "@id" : "bts:Read1" }, { "@id" : "bts:Read2" + }, { + "@id" : "bts:TargetDepth" + }, { + "@id" : "bts:AdapterName" + }, { + "@id" : "bts:AdapterSequence" + }, { + "@id" : "bts:BatchID" + }, { + "@id" : "bts:LaneNumber" }, { "@id" : "bts:TechnicalReplicateGroup" }, { @@ -1669,6 +1861,71 @@ "@id" : "bts:DaystoDeath" } ], "sms:displayName" : "Dead" + }, { + "rdfs:subClassOf" : [ { + "@id" : "bts:Sequencing" + } ], + "@id" : "bts:BulkDNA-seqLevel1", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "sms:requiresComponent" : "", + "rdfs:label" : "BulkDNA-seqLevel1", + "rdfs:comment" : "TBD", + "@type" : "rdfs:Class", + "sms:requiresDependency" : [ { + "@id" : "bts:Component" + }, { + "@id" : "bts:Filename" + }, { + "@id" : "bts:FileFormat" + }, { + "@id" : "bts:ParticipantID" + }, { + "@id" : "bts:SampleID" + }, { + "@id" : "bts:DetailedSampleID" + }, { + "@id" : "bts:SequencingPlatform" + }, { + "@id" : "bts:NucleicAcidSource" + }, { + "@id" : "bts:LibraryConstructionMethod" + }, { + "@id" : "bts:LibrarySelectionMethod" + }, { + "@id" : "bts:LibraryLayout" + }, { + "@id" : "bts:LibraryPreparationKitName" + }, { + "@id" : "bts:LibraryPreparationKitVendor" + }, { + "@id" : "bts:LibraryPreparationKitVersion" + }, { + "@id" : "bts:ReadIndicator" + }, { + "@id" : "bts:ReadLength" + }, { + "@id" : "bts:Read1" + }, { + "@id" : "bts:Read2" + }, { + "@id" : "bts:TargetDepth" + }, { + "@id" : "bts:AdapterName" + }, { + "@id" : "bts:AdapterSequence" + }, { + "@id" : "bts:BatchID" + }, { + "@id" : "bts:LaneNumber" + }, { + "@id" : "bts:TechnicalReplicateGroup" + }, { + "@id" : "bts:TargetCaptureKit" + } ], + "sms:displayName" : "BulkDNA-seqLevel1" }, { "rdfs:subClassOf" : [ { "@id" : "bts:Patient" @@ -1853,12 +2110,34 @@ "@id" : "bts:NucleicAcidSource" }, { "@id" : "bts:LibraryConstructionMethod" + }, { + "@id" : "bts:LibrarySelectionMethod" + }, { + "@id" : "bts:LibraryLayout" + }, { + "@id" : "bts:LibraryPreparationKitName" + }, { + "@id" : "bts:LibraryPreparationKitVendor" + }, { + "@id" : "bts:LibraryPreparationKitVersion" }, { "@id" : "bts:ReadIndicator" + }, { + "@id" : "bts:ReadLength" }, { "@id" : "bts:Read1" }, { "@id" : "bts:Read2" + }, { + "@id" : "bts:TargetDepth" + }, { + "@id" : "bts:AdapterName" + }, { + "@id" : "bts:AdapterSequence" + }, { + "@id" : "bts:BatchID" + }, { + "@id" : "bts:LaneNumber" }, { "@id" : "bts:TechnicalReplicateGroup" }, { @@ -1967,12 +2246,34 @@ "@id" : "bts:NucleicAcidSource" }, { "@id" : "bts:LibraryConstructionMethod" + }, { + "@id" : "bts:LibrarySelectionMethod" + }, { + "@id" : "bts:LibraryLayout" + }, { + "@id" : "bts:LibraryPreparationKitName" + }, { + "@id" : "bts:LibraryPreparationKitVendor" + }, { + "@id" : "bts:LibraryPreparationKitVersion" }, { "@id" : "bts:ReadIndicator" + }, { + "@id" : "bts:ReadLength" }, { "@id" : "bts:Read1" }, { "@id" : "bts:Read2" + }, { + "@id" : "bts:TargetDepth" + }, { + "@id" : "bts:AdapterName" + }, { + "@id" : "bts:AdapterSequence" + }, { + "@id" : "bts:BatchID" + }, { + "@id" : "bts:LaneNumber" }, { "@id" : "bts:TechnicalReplicateGroup" }, { @@ -2824,6 +3125,17 @@ }, "sms:displayName" : "DissociationMethodEnum", "sms:required" : "sms:false" + }, { + "@id" : "bts:LibraryLayoutEnum", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "LibraryLayoutEnum", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "LibraryLayoutEnum", + "sms:required" : "sms:false" }, { "@id" : "bts:BreastCancerAllredEstrogenReceptorScoreEnum", "@type" : "rdfs:Class", @@ -3231,6 +3543,17 @@ }, "sms:displayName" : "AdjacentSampleIDs", "sms:required" : "sms:false" + }, { + "@id" : "bts:AdapterSequence", + "@type" : "rdfs:Class", + "rdfs:comment" : "Base sequence of the sequencing adapter. String", + "rdfs:label" : "AdapterSequence", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "AdapterSequence", + "sms:required" : "sms:false" }, { "@id" : "bts:DaystoDeath", "@type" : "rdfs:Class", @@ -3419,6 +3742,26 @@ "rdfs:comment" : "Text term to describe the result of the examination of the breast tissue specimen or fluid as related to the presence and nature of disease.", "@type" : "rdfs:Class", "sms:displayName" : "BreastBiopsyProcedureFindingType" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:LibraryLayout", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "schema:rangeIncludes" : [ { + "@id" : "bts:PairedEnd" + }, { + "@id" : "bts:SingleRead" + }, { + "@id" : "bts:Mid-length" + }, { + "@id" : "bts:LongRead" + } ], + "rdfs:label" : "LibraryLayout", + "rdfs:comment" : "Sequencing read type", + "@type" : "rdfs:Class", + "sms:displayName" : "LibraryLayout" }, { "rdfs:subClassOf" : [ ], "@id" : "bts:SpecimenLaterality", @@ -4198,6 +4541,17 @@ "rdfs:comment" : "Genomic coverage", "@type" : "rdfs:Class", "sms:displayName" : "GenomicCoverageType" + }, { + "@id" : "bts:TargetDepth", + "@type" : "rdfs:Class", + "rdfs:comment" : "Targeted read depth prior to sequencing. Integer", + "rdfs:label" : "TargetDepth", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "TargetDepth", + "sms:required" : "sms:false" }, { "rdfs:subClassOf" : [ ], "@id" : "bts:PixelType", @@ -4800,6 +5154,17 @@ }, "sms:displayName" : "Filename", "sms:required" : "sms:false" + }, { + "@id" : "bts:AdapterName", + "@type" : "rdfs:Class", + "rdfs:comment" : "Name of the sequencing adapter. String", + "rdfs:label" : "AdapterName", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "AdapterName", + "sms:required" : "sms:false" }, { "@id" : "bts:CountryofBirth", "@type" : "rdfs:Class", @@ -6822,6 +7187,34 @@ }, "sms:displayName" : "PhysicalSizeZ", "sms:required" : "sms:false" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:LibrarySelectionMethod", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:true", + "schema:rangeIncludes" : [ { + "@id" : "bts:hybridselection" + }, { + "@id" : "bts:PCR" + }, { + "@id" : "bts:affinityenrichment" + }, { + "@id" : "bts:poly-Tenrichment" + }, { + "@id" : "bts:random" + }, { + "@id" : "bts:rRNAdepletion" + }, { + "@id" : "bts:miRNAsizefractionation" + }, { + "@id" : "bts:other" + } ], + "rdfs:label" : "LibrarySelectionMethod", + "rdfs:comment" : "How RNA molecules are isolated", + "@type" : "rdfs:Class", + "sms:displayName" : "LibrarySelectionMethod" }, { "rdfs:subClassOf" : [ ], "@id" : "bts:CountryofResidence", @@ -7745,6 +8138,17 @@ "rdfs:comment" : "The text term used to describe the method used for molecular analysis. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", "@type" : "rdfs:Class", "sms:displayName" : "MolecularAnalysisMethod" + }, { + "@id" : "bts:LaneNumber", + "@type" : "rdfs:Class", + "rdfs:comment" : "Basic machine unit for sequencing. For Illumina machines, this reflects the physical lane number. Wrong or missing information may affect analysis results. Integer", + "rdfs:label" : "LaneNumber", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "LaneNumber", + "sms:required" : "sms:false" }, { "@id" : "bts:ParticipantID", "@type" : "rdfs:Class", @@ -7833,6 +8237,18 @@ }, "sms:displayName" : "AcquisitionMethodOtherSpecify", "sms:required" : "sms:false" + }, { + "rdfs:subClassOf" : [ ], + "@id" : "bts:ReadLength", + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:required" : "sms:false", + "sms:validationRules" : [ "num" ], + "rdfs:label" : "ReadLength", + "rdfs:comment" : "Length of the sequencing reads. Can be integer, null", + "@type" : "rdfs:Class", + "sms:displayName" : "ReadLength" }, { "rdfs:subClassOf" : [ ], "@id" : "bts:WellIndex", @@ -8049,6 +8465,17 @@ "rdfs:comment" : "Nuclei isolation buffer", "@type" : "rdfs:Class", "sms:displayName" : "SingleNucleusBuffer" + }, { + "@id" : "bts:LibraryPreparationKitVendor", + "@type" : "rdfs:Class", + "rdfs:comment" : "Vendor of Library Preparation Kit. String", + "rdfs:label" : "LibraryPreparationKitVendor", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "LibraryPreparationKitVendor", + "sms:required" : "sms:false" }, { "@id" : "bts:LensNA", "@type" : "rdfs:Class", @@ -9247,6 +9674,17 @@ }, "sms:displayName" : "Objective", "sms:required" : "sms:false" + }, { + "@id" : "bts:BatchID", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "BatchID", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "BatchID", + "sms:required" : "sms:false" }, { "rdfs:subClassOf" : [ ], "@id" : "bts:VascularInvasionType", @@ -10083,6 +10521,17 @@ }, "sms:displayName" : "TargetName", "sms:required" : "sms:false" + }, { + "@id" : "bts:TargetCaptureKit", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "TargetCaptureKit", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "TargetCaptureKit", + "sms:required" : "sms:true" }, { "@id" : "bts:SecondExon", "@type" : "rdfs:Class", @@ -10131,18 +10580,6 @@ }, "sms:displayName" : "BloodTestNormalRangeUpper", "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:ScATACseqLibraryLayout", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ ], - "rdfs:label" : "ScATACseqLibraryLayout", - "rdfs:comment" : "Sequencing read type", - "@type" : "rdfs:Class", - "sms:displayName" : "ScATACseqLibraryLayout" }, { "@id" : "bts:Immunosuppression", "@type" : "rdfs:Class", @@ -10575,6 +11012,17 @@ }, "sms:displayName" : "FOVnumber", "sms:required" : "sms:false" + }, { + "@id" : "bts:LibraryPreparationKitName", + "@type" : "rdfs:Class", + "rdfs:comment" : "Name of Library Preparation Kit. String", + "rdfs:label" : "LibraryPreparationKitName", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "LibraryPreparationKitName", + "sms:required" : "sms:false" }, { "@id" : "bts:ChannelMetadataFilename", "@type" : "rdfs:Class", @@ -10952,6 +11400,17 @@ "rdfs:comment" : "The text term used to describe the malignant diagnosis of the patient's relative with a history of cancer.", "@type" : "rdfs:Class", "sms:displayName" : "RelationshipPrimaryDiagnosis" + }, { + "@id" : "bts:LibraryPreparationKitVersion", + "@type" : "rdfs:Class", + "rdfs:comment" : "Version of Library Preparation Kit. String", + "rdfs:label" : "LibraryPreparationKitVersion", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "LibraryPreparationKitVersion", + "sms:required" : "sms:true" }, { "@id" : "bts:AppliedHardTrimming", "@type" : "rdfs:Class", @@ -12870,6 +13329,17 @@ }, "sms:displayName" : "vcf", "sms:required" : "sms:false" + }, { + "@id" : "bts:random", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "random", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "random", + "sms:required" : "sms:false" }, { "@id" : "bts:CD25", "@type" : "rdfs:Class", @@ -14498,6 +14968,17 @@ }, "sms:displayName" : "Karyotype", "sms:required" : "sms:false" + }, { + "@id" : "bts:SingleRead", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "SingleRead", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "Single Read", + "sms:required" : "sms:false" }, { "@id" : "bts:bgzip", "@type" : "rdfs:Class", @@ -16962,6 +17443,17 @@ }, "sms:displayName" : "Bile duct adenoma", "sms:required" : "sms:false" + }, { + "@id" : "bts:poly-Tenrichment", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "poly-Tenrichment", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "poly-T enrichment", + "sms:required" : "sms:false" }, { "@id" : "bts:Overlappinglesionofbladder", "@type" : "rdfs:Class", @@ -19635,6 +20127,17 @@ }, "sms:displayName" : "mm", "sms:required" : "sms:false" + }, { + "@id" : "bts:affinityenrichment", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "affinityenrichment", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "affinity enrichment", + "sms:required" : "sms:false" }, { "@id" : "bts:CranialnerveNOS", "@type" : "rdfs:Class", @@ -24684,6 +25187,17 @@ }, "sms:displayName" : "Floor of mouth NOS", "sms:required" : "sms:false" + }, { + "@id" : "bts:PairedEnd", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "PairedEnd", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "Paired End", + "sms:required" : "sms:false" }, { "@id" : "bts:LymphaticleukemicNOS", "@type" : "rdfs:Class", @@ -24772,6 +25286,17 @@ }, "sms:displayName" : "Illumina Genome Analyzer IIx", "sms:required" : "sms:false" + }, { + "@id" : "bts:LongRead", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "LongRead", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "Long Read", + "sms:required" : "sms:false" }, { "@id" : "bts:Bodyofpenis", "@type" : "rdfs:Class", @@ -26796,6 +27321,17 @@ }, "sms:displayName" : "Burkitt tumor", "sms:required" : "sms:false" + }, { + "@id" : "bts:rRNAdepletion", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "rRNAdepletion", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "rRNA depletion", + "sms:required" : "sms:false" }, { "@id" : "bts:H1", "@type" : "rdfs:Class", @@ -28193,6 +28729,17 @@ }, "sms:displayName" : "CDKN2A mutation", "sms:required" : "sms:false" + }, { + "@id" : "bts:PCR", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "PCR", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "PCR", + "sms:required" : "sms:false" }, { "@id" : "bts:Peripheralnervesandautonomicnervoussystemofabdomen", "@type" : "rdfs:Class", @@ -28666,6 +29213,17 @@ }, "sms:displayName" : "chr13", "sms:required" : "sms:false" + }, { + "@id" : "bts:other", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "other", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "other", + "sms:required" : "sms:false" }, { "@id" : "bts:OrbitNOS", "@type" : "rdfs:Class", @@ -30888,6 +31446,17 @@ }, "sms:displayName" : "Submandibular gland", "sms:required" : "sms:false" + }, { + "@id" : "bts:hybridselection", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "hybridselection", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "hybrid selection", + "sms:required" : "sms:false" }, { "@id" : "bts:PigmentednevusNOS", "@type" : "rdfs:Class", @@ -32263,6 +32832,17 @@ }, "sms:displayName" : "Familial gastrointestinal stromal tumor", "sms:required" : "sms:false" + }, { + "@id" : "bts:Mid-length", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "Mid-length", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "Mid-length", + "sms:required" : "sms:false" }, { "@id" : "bts:H2A.Z", "@type" : "rdfs:Class", @@ -32824,6 +33404,17 @@ }, "sms:displayName" : "Grenada", "sms:required" : "sms:false" + }, { + "@id" : "bts:miRNAsizefractionation", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "miRNAsizefractionation", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "miRNA size fractionation", + "sms:required" : "sms:false" }, { "@id" : "bts:Niue", "@type" : "rdfs:Class",