Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

CohortCoreTemplate contains extra terms #75

Closed
cconrad8 opened this issue Oct 12, 2023 · 0 comments · Fixed by #76
Closed

CohortCoreTemplate contains extra terms #75

cconrad8 opened this issue Oct 12, 2023 · 0 comments · Fixed by #76
Assignees
@anngvu
Labels
bug Something isn't working invalid This doesn't seem right

Comments

@cconrad8
Copy link
Contributor

According to the yaml files

CohortCoreTemplate:
is_a: Patient
annotations:
requiresComponent: ''
required: false
slots:
- ParticipantID
- Age
- Sex
- BMI
- Race
- Ethnicity
- VitalStatus
- Height
- Weight
- Gravidity
- Parity
- AgeAtMenarche
- MenstrualCyclePhase
- MenopauseStatus
- PrimaryDiagnosis
- AgeatDiagnosis
- DiagnosisStatusType
- ClassBRCA1
- ClassBRCA2
- TobaccoUse
- PackYearsSmoked
- AlcoholUse
- NumberofDrinksPerWeek
- AntibioticUse
- SampleCollectionCenter
- SampleCollectionYear
- ERStatus
- PRStatus
- HER2Status

however, the template CohortCoreTemplate.xlsx appears to have more AgeIsObfuscated for example and more
Trying to determine why?
@cconrad8 cconrad8 added bug Something isn't working invalid This doesn't seem right labels Oct 12, 2023
@anngvu anngvu mentioned this issue Oct 25, 2023
Merged
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@anngvu anngvu

Labels
bug Something isn't working invalid This doesn't seem right
Projects
Gray Foundation Development
Status: Done
Milestone
No milestone
Development

Successfully merging a pull request may close this issue.

Patch/issue 75 gf-dcc/data-model
2 participants
@anngvu @cconrad8