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[Ubuntu] ERROR: Failed building wheel for psutil #2301

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BillRaymond opened this issue Aug 30, 2023 · 3 comments
Closed

[Ubuntu] ERROR: Failed building wheel for psutil #2301

BillRaymond opened this issue Aug 30, 2023 · 3 comments
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bug linux wheels

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@BillRaymond
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Summary

  • OS: { Ubuntu 22.02 }
  • Architecture: { ARM64 }
  • Psutil version: { pip3 show psutil: WARNING: Package(s) not found: psutil }
  • Python version: { 3.11.5 }
  • Type: { installation }

Description

I am building a Docker container to use JupyterLab, which fails to build due to an error with psutil, so I attempted to install pustil first and that appears to be the issue. I install Python using the deadsnakes PPA, like this:

ARG PYVER="3.11"
RUN apt-get install -y software-properties-common && \
    add-apt-repository -y ppa:deadsnakes/ppa && \
    apt-get install -y python$PYVER \
    python3-pip

Next, I upgrade/update my package managers. I also make sure 3.11.5 (which is the most current version of 3.11.x at the time of this writing), like this:

# Upgrade packages to the latest version
RUN apt-get -y upgrade && \
    python3 -m pip install --upgrade pip

# Set PYVER as the default Python interpreter
RUN update-alternatives --install /usr/bin/python3 python /usr/bin/python$PYVER 1
RUN update-alternatives --set python /usr/bin/python$PYVER

I install gcc, musl-dev and python3-dev, like this:

apt-get install -y gcc musl-dev python$PYVER-dev

Whether I use pip install psutil or the more detailed version, which is pip install --no-binary :all: psutil, psutil never installs.

Here is the detailed log when using pip install --no-binary :all: psutil:

root@db974e421c12:/workspaces/my-ai-docker-image# pip install --no-binary :all: psutil
Collecting psutil
  Using cached psutil-5.9.5.tar.gz (493 kB)
  Installing build dependencies ... done
  Getting requirements to build wheel ... done
  Preparing metadata (pyproject.toml) ... done
Building wheels for collected packages: psutil
  Building wheel for psutil (pyproject.toml) ... error
  error: subprocess-exited-with-error
  
  × Building wheel for psutil (pyproject.toml) did not run successfully.
  │ exit code: 1
  ╰─> [106 lines of output]
      running bdist_wheel
      running build
      running build_py
      creating build
      creating build/lib.linux-aarch64-3.11
      creating build/lib.linux-aarch64-3.11/psutil
      copying psutil/_psposix.py -> build/lib.linux-aarch64-3.11/psutil
      copying psutil/__init__.py -> build/lib.linux-aarch64-3.11/psutil
      copying psutil/_psbsd.py -> build/lib.linux-aarch64-3.11/psutil
      copying psutil/_psosx.py -> build/lib.linux-aarch64-3.11/psutil
      copying psutil/_pswindows.py -> build/lib.linux-aarch64-3.11/psutil
      copying psutil/_pssunos.py -> build/lib.linux-aarch64-3.11/psutil
      copying psutil/_psaix.py -> build/lib.linux-aarch64-3.11/psutil
      copying psutil/_pslinux.py -> build/lib.linux-aarch64-3.11/psutil
      copying psutil/_common.py -> build/lib.linux-aarch64-3.11/psutil
      copying psutil/_compat.py -> build/lib.linux-aarch64-3.11/psutil
      creating build/lib.linux-aarch64-3.11/psutil/tests
      copying psutil/tests/test_bsd.py -> build/lib.linux-aarch64-3.11/psutil/tests
      copying psutil/tests/test_sunos.py -> build/lib.linux-aarch64-3.11/psutil/tests
      copying psutil/tests/test_system.py -> build/lib.linux-aarch64-3.11/psutil/tests
      copying psutil/tests/test_misc.py -> build/lib.linux-aarch64-3.11/psutil/tests
      copying psutil/tests/test_memleaks.py -> build/lib.linux-aarch64-3.11/psutil/tests
      copying psutil/tests/__init__.py -> build/lib.linux-aarch64-3.11/psutil/tests
      copying psutil/tests/__main__.py -> build/lib.linux-aarch64-3.11/psutil/tests
      copying psutil/tests/test_windows.py -> build/lib.linux-aarch64-3.11/psutil/tests
      copying psutil/tests/test_posix.py -> build/lib.linux-aarch64-3.11/psutil/tests
      copying psutil/tests/test_process.py -> build/lib.linux-aarch64-3.11/psutil/tests
      copying psutil/tests/test_unicode.py -> build/lib.linux-aarch64-3.11/psutil/tests
      copying psutil/tests/test_contracts.py -> build/lib.linux-aarch64-3.11/psutil/tests
      copying psutil/tests/test_osx.py -> build/lib.linux-aarch64-3.11/psutil/tests
      copying psutil/tests/test_aix.py -> build/lib.linux-aarch64-3.11/psutil/tests
      copying psutil/tests/test_linux.py -> build/lib.linux-aarch64-3.11/psutil/tests
      copying psutil/tests/runner.py -> build/lib.linux-aarch64-3.11/psutil/tests
      copying psutil/tests/test_connections.py -> build/lib.linux-aarch64-3.11/psutil/tests
      copying psutil/tests/test_testutils.py -> build/lib.linux-aarch64-3.11/psutil/tests
      running build_ext
      creating build/temp.linux-aarch64-3.11
      creating build/temp.linux-aarch64-3.11/psutil
      aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DPSUTIL_POSIX=1 -DPSUTIL_SIZEOF_PID_T=4 -DPSUTIL_VERSION=595 -DPy_LIMITED_API=0x03060000 -DPSUTIL_LINUX=1 -I/usr/include/python3.11 -c psutil/_psutil_common.c -o build/temp.linux-aarch64-3.11/psutil/_psutil_common.o
      aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DPSUTIL_POSIX=1 -DPSUTIL_SIZEOF_PID_T=4 -DPSUTIL_VERSION=595 -DPy_LIMITED_API=0x03060000 -DPSUTIL_LINUX=1 -I/usr/include/python3.11 -c psutil/_psutil_linux.c -o build/temp.linux-aarch64-3.11/psutil/_psutil_linux.o
      aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DPSUTIL_POSIX=1 -DPSUTIL_SIZEOF_PID_T=4 -DPSUTIL_VERSION=595 -DPy_LIMITED_API=0x03060000 -DPSUTIL_LINUX=1 -I/usr/include/python3.11 -c psutil/_psutil_posix.c -o build/temp.linux-aarch64-3.11/psutil/_psutil_posix.o
      aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-aarch64-3.11/psutil/_psutil_common.o build/temp.linux-aarch64-3.11/psutil/_psutil_linux.o build/temp.linux-aarch64-3.11/psutil/_psutil_posix.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-3.11/psutil/_psutil_linux.abi3.so
      aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DPSUTIL_POSIX=1 -DPSUTIL_SIZEOF_PID_T=4 -DPSUTIL_VERSION=595 -DPy_LIMITED_API=0x03060000 -DPSUTIL_LINUX=1 -I/usr/include/python3.11 -c psutil/_psutil_common.c -o build/temp.linux-aarch64-3.11/psutil/_psutil_common.o
      aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DPSUTIL_POSIX=1 -DPSUTIL_SIZEOF_PID_T=4 -DPSUTIL_VERSION=595 -DPy_LIMITED_API=0x03060000 -DPSUTIL_LINUX=1 -I/usr/include/python3.11 -c psutil/_psutil_posix.c -o build/temp.linux-aarch64-3.11/psutil/_psutil_posix.o
      aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-aarch64-3.11/psutil/_psutil_common.o build/temp.linux-aarch64-3.11/psutil/_psutil_posix.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-3.11/psutil/_psutil_posix.abi3.so
      running install
      running install_lib
      psutil could not be installed from sources. Perhaps Python header files are not installed. Try running:
        sudo apt-get install gcc python3-dev
      Traceback (most recent call last):
        File "/usr/lib/python3/dist-packages/pip/_vendor/pep517/in_process/_in_process.py", line 363, in <module>
          main()
        File "/usr/lib/python3/dist-packages/pip/_vendor/pep517/in_process/_in_process.py", line 345, in main
          json_out['return_val'] = hook(**hook_input['kwargs'])
                                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
        File "/usr/lib/python3/dist-packages/pip/_vendor/pep517/in_process/_in_process.py", line 261, in build_wheel
          return _build_backend().build_wheel(wheel_directory, config_settings,
                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
        File "/usr/lib/python3/dist-packages/setuptools/build_meta.py", line 230, in build_wheel
          return self._build_with_temp_dir(['bdist_wheel'], '.whl',
                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
        File "/usr/lib/python3/dist-packages/setuptools/build_meta.py", line 215, in _build_with_temp_dir
          self.run_setup()
        File "/usr/lib/python3/dist-packages/setuptools/build_meta.py", line 158, in run_setup
          exec(compile(code, __file__, 'exec'), locals())
        File "setup.py", line 497, in <module>
          main()
        File "setup.py", line 462, in main
          setup(**kwargs)
        File "/usr/lib/python3/dist-packages/setuptools/__init__.py", line 153, in setup
          return distutils.core.setup(**attrs)
                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
        File "/usr/lib/python3/dist-packages/setuptools/_distutils/core.py", line 148, in setup
          return run_commands(dist)
                 ^^^^^^^^^^^^^^^^^^
        File "/usr/lib/python3/dist-packages/setuptools/_distutils/core.py", line 163, in run_commands
          dist.run_commands()
        File "/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py", line 967, in run_commands
          self.run_command(cmd)
        File "/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py", line 986, in run_command
          cmd_obj.run()
        File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 335, in run
          self.run_command('install')
        File "/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py", line 313, in run_command
          self.distribution.run_command(command)
        File "/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py", line 986, in run_command
          cmd_obj.run()
        File "/usr/lib/python3/dist-packages/setuptools/command/install.py", line 68, in run
          return orig.install.run(self)
                 ^^^^^^^^^^^^^^^^^^^^^^
        File "/usr/lib/python3/dist-packages/setuptools/_distutils/command/install.py", line 622, in run
          self.run_command(cmd_name)
        File "/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py", line 313, in run_command
          self.distribution.run_command(command)
        File "/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py", line 985, in run_command
          cmd_obj.ensure_finalized()
        File "/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py", line 107, in ensure_finalized
          self.finalize_options()
        File "/usr/lib/python3/dist-packages/setuptools/command/install_lib.py", line 17, in finalize_options
          self.set_undefined_options('install',('install_layout','install_layout'))
        File "/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py", line 290, in set_undefined_options
          setattr(self, dst_option, getattr(src_cmd_obj, src_option))
                                    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
        File "/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py", line 103, in __getattr__
          raise AttributeError(attr)
      AttributeError: install_layout. Did you mean: 'install_platlib'?
      [end of output]
  
  note: This error originates from a subprocess, and is likely not a problem with pip.
  ERROR: Failed building wheel for psutil
Failed to build psutil
ERROR: Could not build wheels for psutil, which is required to install pyproject.toml-based projects
root@db974e421c12:/workspaces/my-ai-docker-image# pip3 show psutil                     
WARNING: Package(s) not found: psutil

How can I successfully install psutil?

Side note: If I change my Python version to 3.10.x, psutil installs just fine.
@BillRaymond
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Sorry, Ubuntu 22.04

@ben9923
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ben9923 commented Aug 31, 2023

Ubuntu is using glibc, no need to install musl-dev.

Notice you're running python3 -m pip install --upgrade pip before running update-alternatives.
This means you upgraded pip to the latest 23.2.1 for Python 3.10, but for Python 3.11 the apt-provided pip 22.0.2 is still used.

Run update-alternatives before updating pip to actually have an up-to-date pip with proper 3.11 support - it should resolve the problem for you :)

@BillRaymond
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Thank you @ben9923! I was so focused on getting the correct version of Python3 installed that I had yet to consider that pip would be the problem. I just wanted to let you know that you fixed my situation, and all is functioning as expected. Thanks again!

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@BillRaymond @ben9923