execute notebooks to verify them

[giocaizzi]

run all notebooks to:

• avoid code changes to brake code

[giocaizzi]

fails unexpectedly

Run jupyter nbconvert --to notebook --execute --inplace docsrc/source/examples/*
  
[NbConvertApp] Converting notebook docsrc/source/examples/estimator.ipynb to notebook
[NbConvertApp] Writing 610 bytes to docsrc/source/examples/estimator.ipynb
[NbConvertApp] Converting notebook docsrc/source/examples/preprocessing.ipynb to notebook
Traceback (most recent call last):
  File "/opt/hostedtoolcache/Python/3.10.12/x64/bin/jupyter-nbconvert", line 8, in <module>
    sys.exit(main())
  File "/opt/hostedtoolcache/Python/3.10.12/x64/lib/python3.10/site-packages/jupyter_core/application.py", line 285, in launch_instance
    return super().launch_instance(argv=argv, **kwargs)
  File "/opt/hostedtoolcache/Python/3.10.12/x64/lib/python3.10/site-packages/traitlets/config/application.py", line 1043, in launch_instance
    app.start()
  File "/opt/hostedtoolcache/Python/3.10.12/x64/lib/python3.10/site-packages/nbconvert/nbconvertapp.py", line 414, in start
    self.convert_notebooks()
  File "/opt/hostedtoolcache/Python/3.10.12/x64/lib/python3.10/site-packages/nbconvert/nbconvertapp.py", line 589, in convert_notebooks
    self.convert_single_notebook(notebook_filename)
  File "/opt/hostedtoolcache/Python/3.10.12/x64/lib/python3.10/site-packages/nbconvert/nbconvertapp.py", line 555, in convert_single_notebook
    output, resources = self.export_single_notebook(
  File "/opt/hostedtoolcache/Python/3.10.12/x64/lib/python3.10/site-packages/nbconvert/nbconvertapp.py", line 481, in export_single_notebook
    output, resources = self.exporter.from_filename(
  File "/opt/hostedtoolcache/Python/3.10.12/x64/lib/python3.10/site-packages/nbconvert/exporters/exporter.py", line 201, in from_filename
    return self.from_file(f, resources=resources, **kw)
  File "/opt/hostedtoolcache/Python/3.10.12/x64/lib/python3.10/site-packages/nbconvert/exporters/exporter.py", line 220, in from_file
    return self.from_notebook_node(
  File "/opt/hostedtoolcache/Python/3.10.12/x64/lib/python3.10/site-packages/nbconvert/exporters/notebook.py", line 36, in from_notebook_node
    nb_copy, resources = super().from_notebook_node(nb, resources, **kw)
  File "/opt/hostedtoolcache/Python/3.10.12/x64/lib/python3.10/site-packages/nbconvert/exporters/exporter.py", line 154, in from_notebook_node
    nb_copy, resources = self._preprocess(nb_copy, resources)
  File "/opt/hostedtoolcache/Python/3.10.12/x64/lib/python3.10/site-packages/nbconvert/exporters/exporter.py", line 352, in _preprocess
    nbc, resc = preprocessor(nbc, resc)
  File "/opt/hostedtoolcache/Python/3.10.12/x64/lib/python3.10/site-packages/nbconvert/preprocessors/base.py", line 48, in __call__
    return self.preprocess(nb, resources)
  File "/opt/hostedtoolcache/Python/3.10.12/x64/lib/python3.10/site-packages/nbconvert/preprocessors/execute.py", line 100, in preprocess
    self.preprocess_cell(cell, resources, index)
  File "/opt/hostedtoolcache/Python/3.10.12/x64/lib/python3.10/site-packages/nbconvert/preprocessors/execute.py", line 121, in preprocess_cell
    cell = self.execute_cell(cell, index, store_history=True)
  File "/opt/hostedtoolcache/Python/3.10.12/x64/lib/python3.10/site-packages/jupyter_core/utils/__init__.py", line 166, in wrapped
    return loop.run_until_complete(inner)
  File "/opt/hostedtoolcache/Python/3.10.12/x64/lib/python3.10/asyncio/base_events.py", line 649, in run_until_complete
    return future.result()
  File "/opt/hostedtoolcache/Python/3.10.12/x64/lib/python3.10/site-packages/nbclient/client.py", line 1058, in async_execute_cell
    await self._check_raise_for_error(cell, cell_index, exec_reply)
  File "/opt/hostedtoolcache/Python/3.10.12/x64/lib/python3.10/site-packages/nbclient/client.py", line 914, in _check_raise_for_error
    raise CellExecutionError.from_cell_and_msg(cell, exec_reply_content)
nbclient.exceptions.CellExecutionError: An error occurred while executing the following cell:
------------------
%load_ext autoreload
%autoreload 2

from py3dinterpolations.core.griddata import GridData
from py3dinterpolations.modelling.preprocessor import Preprocessor
from py3dinterpolations.plotting.plotting import plot_downsampling

import pandas as pd
------------------


---------------------------------------------------------------------------
ModuleNotFoundError                       Traceback (most recent call last)
Cell In[1], line 4
      1 get_ipython().run_line_magic('load_ext', 'autoreload')
      2 get_ipython().run_line_magic('autoreload', '2')
----> 4 from py3dinterpolations.core.griddata import GridData
      5 from py3dinterpolations.modelling.preprocessor import Preprocessor
      6 from py3dinterpolations.plotting.plotting import plot_downsampling

File /opt/hostedtoolcache/Python/3.10.12/x64/lib/python3.10/site-packages/py3dinterpolations/__init__.py:14
     [11](https://github.com/giocaizzi/py3dinterpolations/actions/runs/5632177285/job/15259936878#step:6:11) __email__ = "[email protected]"
     [13](https://github.com/giocaizzi/py3dinterpolations/actions/runs/5632177285/job/15259936878#step:6:14) from .core.griddata import GridData
---> [14](https://github.com/giocaizzi/py3dinterpolations/actions/runs/5632177285/job/15259936878#step:6:15) from .modelling.interpolate import interpolate
     [15](https://github.com/giocaizzi/py3dinterpolations/actions/runs/5632177285/job/15259936878#step:6:16) from .plotting.plotting import plot_3d_model, plot_2d_model
     [17](https://github.com/giocaizzi/py3dinterpolations/actions/runs/5632177285/job/15259936878#step:6:18) __all__ = ["__version__", "GridData", "interpolate", "plot_3d_model", "plot_2d_model"]

ModuleNotFoundError: No module named 'py3dinterpolations.modelling'

Error: Process completed with exit code 1.

[giocaizzi]

https://giocaizzi.github.io/py3dinterpolations/examples/quickstart.html