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DESCRIPTION
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DESCRIPTION
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Package: igvShiny
Title: igvShiny: a wrapper of Integrative Genomics Viewer (IGV - an interactive
tool for visualization and exploration integrated genomic data)
Version: 1.0.5
Date: 2024-08-25
Authors@R: c(
person("Paul","Shannon", role = c("aut"),
email = "[email protected]"),
person("Arkadiusz", "Gladki", role=c("aut", "cre"),
email="[email protected]", comment = c(ORCID = "0000-0002-7059-6378")),
person("Karolina","Scigocka", role = c("aut"),
email = "[email protected]")
)
Description: This package is a wrapper of Integrative Genomics Viewer (IGV).
It comprises an htmlwidget version of IGV. It can be used as a module
in Shiny apps.
URL: https://github.com/gladkia/igvShiny, https://gladkia.github.io/igvShiny/
BugReports: https://github.com/gladkia/igvShiny/issues
Depends:
GenomicRanges,
methods,
shiny
Imports:
BiocGenerics,
checkmate,
futile.logger,
GenomeInfoDbData,
htmlwidgets,
httr,
jsonlite,
randomcoloR,
utils
Suggests:
BiocStyle,
GenomicAlignments,
knitr,
Rsamtools,
rtracklayer,
RUnit,
shinytest2,
VariantAnnotation
biocViews: Software, ShinyApps, Sequencing, Coverage
License: MIT + file LICENSE
Encoding: UTF-8
Collate:
'constants.R'
'genomeSpec.R'
'GWASTrack.R'
'igvShiny.R'
'packages.R'
'test_igvShiny_package.R'
'utils.R'
'zzz.R'
RoxygenNote: 7.3.1
VignetteBuilder:
knitr