release.yml

jobs:
  build:
    name: build
    runs-on: ${{ matrix.os }}
    strategy:
      matrix:
        os: [ macos-13, windows-2019 ]
        python-version: [ "3.8" ]
      fail-fast: false
    steps:
      - uses: actions/checkout@v4
        name: Checkout Repo
      - uses: actions/setup-python@v4
        name: Install Python
        with:
          architecture: x64
          python-version: ${{ matrix.python-version }}
          cache: pip
          cache-dependency-path: setup.py
      - uses: actions/setup-java@v3
        name: Install Java
        with:
          distribution: "temurin"
          java-version: "11.0.20+8" # The JDK version to make available on the path.
          java-package: jdk
          architecture: x64

      - name: Install build-time dependencies
        run: |
          pip install --upgrade wheel pip
          pip install setuptools==49
          pip install numpy==1.23.1
          pip install pyinstaller-hooks-contrib==2024.2
          pip install pyinstaller==5.13.2
          pip install imageio==2.34.0
          pip install cython
          pip install lxml
      - env:
          LDFLAGS: -L/usr/local/opt/openssl/lib
          CERTIFICATE_OSX_APPLICATION: ${{ secrets.CERTIFICATE_OSX_APPLICATION }}
          CERTIFICATE_PASSWORD: ${{ secrets.CERTIFICATE_PASSWORD }}
        if: startsWith(matrix.os, 'macos')
        name: MacOS dependency install
        run: |
          brew install graphicsmagick imagemagick
          npm install --global create-dmg
          brew install mysql@8.0
          brew link mysql@8.0
          pip install mysqlclient==2.0.3
          pip install https://github.com/DavidStirling/prokaryote/releases/download/v2.4.5/prokaryote-2.4.5.tar.gz --no-cache-dir --no-build-isolation
          git clone https://github.com/glencoesoftware/core.git
          cd core
          git checkout compat-4-2
          pip install --editable . --upgrade
          cd ..
          pip install https://github.com/DavidStirling/python-bioformats/releases/download/v4.1.10001/python_bioformats-4.1.10001-py3-none-any.whl
          pip install --editable .
      - env:
          JDK_HOME: ${{ env.JAVA_HOME }}
          CPPFLAGS: -I/usr/local/opt/mysql@8.0/include
          LDFLAGS: "-L/usr/local/opt/mysql@8.0/lib -L/usr/local/opt/openssl/lib"
        if: startsWith(matrix.os, 'windows')
        name: Windows dependency install
        run: |
          python -m pip install --upgrade pip setuptools wheel
          pip install mysqlclient==2.0.3
          pip install https://github.com/DavidStirling/prokaryote/releases/download/v2.4.5/prokaryote-2.4.5.tar.gz --no-cache-dir --no-build-isolation
          git clone https://github.com/glencoesoftware/core.git
          cd core
          git checkout compat-4-2
          pip install --editable . --upgrade
          cd ..
          pip install https://github.com/DavidStirling/python-bioformats/releases/download/v4.1.10001/python_bioformats-4.1.10001-py3-none-any.whl
          pip install --editable .
          pip install wxpython==4.1.1
      - name: Install plugins
        run: |
          pip install torch==2.2.1
          pip install cellpose==3.0.5
          pip install csbdeep==0.7.4
          pip install stardist==0.8.1
          pip install tensorflow==2.12.1
          pip install markupsafe==2.0.1
          pip install h5py==3.6.0
      - name: Display installed packages
        run: pip list
      - if: startsWith(matrix.os, 'windows')
        name: Windows pyinstaller build and package
        run: |
          pyinstaller distribution/windows/cellprofiler.spec
          rm ./dist/CellProfiler/jvm.dll
          iscc /dMyAppVersion="4.2.80001-ai" "distribution/windows/cellprofiler.iss"
      - if: startsWith(matrix.os, 'macos')
        name: MacOS pyinstaller build and package
        run: |
          pyinstaller -y ./distribution/macos/CellProfiler.spec
      - if: startsWith(matrix.os, 'macos')
        name: MacOS dmg package
        continue-on-error: true
        run: |
          cd dist
          echo Creating DMG
          create-dmg 'CellProfiler+AI.app' --dmg-title "CellProfiler+AI.dmg"
      - if: startsWith(matrix.os, 'macos')
        uses: actions/upload-artifact@v4
        name: MacOS dmg upload
        with:
          name: CellProfiler-macOS-4.2.80001-ai.dmg
          path: ./dist/*.dmg
      - if: startsWith(matrix.os, 'windows')
        uses: actions/upload-artifact@v4
        name: Windows artifact upload
        with:
          name: CellProfiler-Windows-4.2.80001-ai.exe
          path: ./distribution/windows/Output/*.exe
  upload:
    name: upload
    needs: build
    runs-on: ubuntu-latest
    if: startsWith(github.ref, 'refs/tags/')
    steps:
      - name: Download artifacts
        uses: actions/download-artifact@v4
        with:
          path: ./
          merge-multiple: true
      - name: Create release
        uses: softprops/action-gh-release@v2
        with:
          draft: true
          files: |
            ./*.exe
            ./*.dmg

name: create-release
on:
  push:
    branches:
      - compat-4-2-ai
    tags:
      - "v*"
  pull_request:
    branches:
      - compat-4-2-ai