Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

mrxs Z stacks not supported #42

Open
melissalinkert opened this issue Jun 16, 2020 · 3 comments
Open

mrxs Z stacks not supported #42

melissalinkert opened this issue Jun 16, 2020 · 3 comments
Labels
enhancement New feature or request

Comments

@melissalinkert
Copy link
Member

SizeZ is always set to 1, which seems to cause some tile offsets to be incorrect or out of order. This causes errors as reported in https://forum.image.sc/t/bioformats2raw-support/33447. A test dataset with 26 Z sections is in inbox/mrxs-multi-z/.
@camlloyd
Copy link

Do you have a timeline for this? Thank you!

@chris-allan
Copy link
Member

@camlloyd: This is not high on our priority list to resolve at the moment. If you are in a position to work on it and submit a PR please do!

@melissalinkert
Copy link
Member Author

Two additional test datasets in curated/mirax/alex/zStack (from https://trac.openmicroscopy.org/ome/ticket/11303).

@melissalinkert melissalinkert moved this to Inbox in Converters Mar 17, 2022
@melissalinkert melissalinkert added the enhancement New feature or request label Mar 31, 2023
@melissalinkert melissalinkert moved this from Inbox to bioformats2raw 0.8.0 in Converters Jul 25, 2023
@melissalinkert melissalinkert moved this from bioformats2raw 0.8.0 to Inbox in Converters Nov 27, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
enhancement New feature or request
Projects
Converters
Status: Inbox
Milestone
No milestone
Development

No branches or pull requests
3 participants
@melissalinkert @chris-allan @camlloyd