diff --git a/.gitignore b/.gitignore index 7035952..a94d79b 100644 --- a/.gitignore +++ b/.gitignore @@ -9,7 +9,7 @@ __pycache__/ # only html in outbreaks folder *.html -!tests/outbreaks/*.html +!src/obr/outbreaks/*.html # C extensions *.so diff --git a/src/obr/outbreaks/marburg.html b/src/obr/outbreaks/marburg.html new file mode 100644 index 0000000..d5c6c67 --- /dev/null +++ b/src/obr/outbreaks/marburg.html @@ -0,0 +1,109 @@ + + + + + + + Marburg 2023 Equatorial Guinea Outbreak - {{ published_date }} + + + + + + + + + + +
+ +

Marburg 2023 Equatorial Guinea Outbreak
{{ published_date }}

+

From the Global.health team (info@global.health) +

+ +

Summary

+ + {{#info}} +
+

{{ info }}

+
+ {{/info}} + +

+ {{ n_confirmed }} confirmed and {{ n_probable }} + probable cases as of {{ date }} +

+ +
+ + {{{ epicurve }}} + +
+ Figure 1: Number of cumulative confirmed and probable cases + by date of onset. Where date of onset is not available, it is + estimated from the date of first consult/hospitalisation or date + of death, by shifting the value by the delay distribution mean. + Only cases where date of onset is known or can be estimated are shown. +
+
+ +
+ + {{{ epicurve_location_status }}} + +
+ Figure 2: Number of cumulative confirmed and probable cases + stratified by district. Date of onset is estimated when not available as in Figure 1. + Only cases where date of onset is known or can be estimated and have a corresponding + district are shown. +
+
+ +
+ + {{{ age_gender }}} +
+ Figure 3: Age and gender distribution of + Marburg 2023 confirmed cases in Equatorial Guinea. + {{ pc_valid_age_gender }}% of confirmed cases include + sufficient metadata to be included in this figure. When reported + age ranges span multiple age categories, counts are evenly + distributed among the categories that capture the reported age + range. +
+
+ +
+ + {{{ delay_distribution_consult }}} + + {{{ delay_distribution_death }}} + +
+ Figure 4: Delay distributions from date of + symptom onset A) Between onset and first consult B) Between + onset and death. Only includes cases that have both date of onset + and either date of first consult (A) or date of death (B). +
+
+ +

Data accessibility and reproducibility: All data + used in this report are available from our data + repository. Should you identify any issues or have questions please + raise an issue on GitHub or write to + us: info@global.health.

+ +
+ + +