| layout | id | title | type | fail_mode | status | contact | implementations | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
rule |
GORULE:0000001 |
GAF lines are parsed according to GAF 2.1 specifications |
filter |
hard |
implemented |
|
Each line of a GAF file is checked that it generally conforms to the GAF 2.1 spec and some GO specific specifications. The GAF 2.1 spec is here: http://geneontology.org/page/go-annotation-file-gaf-format-21.
Qualifier, evidence, aspect and DB object columns must be within the list of allowed values (as per the spec).
Error report (number of errors) in [db_species]-summary.txt & owltools-check.txt (details).