reframe test and ICs for yee_2d Arepo

benchmarks/apps/arepo/README.md

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+
+
+[Arepo](https://gitlab.mpcdf.mpg.de/vrs/arepo) is a massively parallel gravity and magnetohydrodynamics code for astrophysics, designed for problems of large dynamic range. It employs a finite-volume approach to discretize the equations of hydrodynamics on a moving Voronoi mesh, and a tree-particle-mesh method for gravitational interactions. Arepo is originally optimized for cosmological simulations of structure formation, but has also been used in many other applications in astrophysics.

benchmarks/apps/arepo/arepo.py

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+# Copyright 2021 University College London (UCL) Research Software Development
+# Group.  See the top-level LICENSE file for details.
+#
+# SPDX-License-Identifier: Apache-2.0
+
+import reframe as rfm
+import reframe.utility.sanity as sn
+from benchmarks.modules.utils import SpackTest
+import os.path as path
+
+@rfm.simple_test
+class ArepoBenchmark(SpackTest):
+    valid_systems = ['-gpu']
+    valid_prog_environs = ['default']
+    spack_spec = 'arepo@master'  
+    num_tasks = 4
+    num_tasks_per_node = 1
+    num_cpus_per_task = 1
+    sourcesdir = path.join(path.dirname(__file__), 'input')
+    executable = 'Arepo' 
+    time_limit = '20m'
+    reference = {
+        'cosma8': {
+            'duration': (40, None, 0.2, 'seconds'),
+        },
+        '*': {
+            'duration': (200, None, None, 'seconds'),
+        },
+    }
+
+    @run_after('setup')
+    def setup_variables(self):
+        self.executable_opts = ['param.txt']  
+        self.env_vars['OMP_NUM_THREADS'] = f'{self.num_cpus_per_task}'
+
+    @run_before('sanity')
+    def set_sanity_patterns(self):
+        self.sanity_patterns = sn.assert_found(r'bye!', self.stdout)
+
+    @run_before('performance')
+    def set_perf_patterns(self):
+        self.perf_patterns = {
+        'duration': sn.extractsingle(
+            r'Code run for (\S+) seconds!',
+            self.stdout, 1, float),
+    }
+

benchmarks/apps/arepo/input/param.txt

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+%% ./examples/Yee_2d/param.txt
+% parameter file for 2d Yee vortex problem
+
+InitCondFile                          ./IC
+ICFormat                              3
+
+OutputDir                             ./output/
+SnapshotFileBase                      snap
+SnapFormat                            3
+NumFilesPerSnapshot                   1
+NumFilesWrittenInParallel             1
+
+ResubmitOn                            0
+ResubmitCommand                       my-scriptfile
+OutputListFilename                    ol
+OutputListOn                          0
+
+CoolingOn                             0
+StarformationOn                       0
+
+Omega0                                0.0
+OmegaBaryon                           0.0
+OmegaLambda                           0.0
+HubbleParam                           1.0
+
+BoxSize                               10.0
+PeriodicBoundariesOn                  1
+ComovingIntegrationOn                 0
+
+MaxMemSize                            2500
+TimeOfFirstSnapshot                   0.0
+CpuTimeBetRestartFile                 9000
+TimeLimitCPU                          90000
+
+TimeBetStatistics                     0.5
+TimeBegin                             0.0
+TimeMax                               10.0
+TimeBetSnapshot                       10.0
+
+UnitVelocity_in_cm_per_s              1.0
+UnitLength_in_cm                      1.0
+UnitMass_in_g                         1.0
+GravityConstantInternal               0.0
+
+ErrTolIntAccuracy                     0.1
+ErrTolTheta                           0.1
+ErrTolForceAcc                        0.1
+
+MaxSizeTimestep                       1.0
+MinSizeTimestep                       1e-5
+CourantFac                            0.3
+
+LimitUBelowThisDensity                0.0
+LimitUBelowCertainDensityToThisValue  0.0
+DesNumNgb                             64
+
+MultipleDomains                       2
+TopNodeFactor                         4
+ActivePartFracForNewDomainDecomp      0.01
+MaxNumNgbDeviation                    2
+
+TypeOfTimestepCriterion               0
+TypeOfOpeningCriterion                1
+GasSoftFactor                         0.01
+
+SofteningComovingType0                0.1
+SofteningComovingType1                0.1
+SofteningComovingType2                0.1
+SofteningComovingType3                0.1
+SofteningComovingType4                0.1
+SofteningComovingType5                0.1
+
+SofteningMaxPhysType0                0.1
+SofteningMaxPhysType1                0.1
+SofteningMaxPhysType2                0.1
+SofteningMaxPhysType3                0.1
+SofteningMaxPhysType4                0.1
+SofteningMaxPhysType5                0.1
+
+SofteningTypeOfPartType0             0
+SofteningTypeOfPartType1             0
+SofteningTypeOfPartType2             0
+SofteningTypeOfPartType3             0
+SofteningTypeOfPartType4             0
+SofteningTypeOfPartType5             0
+
+InitGasTemp                          0.0
+MinGasTemp                           0.0
+MinEgySpec                           0.0
+MinimumDensityOnStartUp              0.0
+
+CellShapingSpeed                     0.5
+CellMaxAngleFactor                   2.25 
+