Support for Ibisdata #133
Replies: 3 comments
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Thanks for the kind words and interest in gos! I will definitely look into IbisData. One thing I'm very interested in is (optional) further integration with Python backends to support better interactive visualization of genome-mapped data during analysis in notebook environments. This idea of a data layer with Ibis to pull data on demand is very exciting. |
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When I was at OmniSci (now heavy.ai), we worked on exactly this goal, by creating an Happy to answer questions on how this might work... |
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See this ungated version of the same presentation with Saul - https://www.youtube.com/watch?v=DTl32fWhm6c |
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Just learned of gosling today via twitter. I used to work at
heavy.aion large-scale dataviz and have been pretty close to the Vega/VegaLite ecosystem for a few years, including collaborations with that team.First of all, wanted to say that this is a FANTASTIC project - kudos to everyone involved for a truly next-gen way of taking genomics data and turning it into a comprehensive set of visualizations. I've always felt that this area has been underserved and you've all done a tremendous job!
I work at sneller.io now - which may be of some interest. We allow for SQL on very large-scale JSON collections - see here. It may be of interest if you have data collections of this sort.
Next - One of the projects I worked on in the past is IbisData - This allows you to use SQL databases/DWs as backends in a pythonic data workflow without needing SQL directly. It might be interesting to explore how to back gosling/gos with Ibis so you can put large genomic data sets in central storage and use Ibis to only pull in the data needed on demand.
Hope this helps - again, fantastic work and will stay close to this!
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