Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

How can one visualize GFF files coverage, FPKM ; TPM values in a genome browser? #87

Open
pbuendia opened this issue Feb 6, 2024 · 0 comments

Comments

@pbuendia
Copy link

pbuendia commented Feb 6, 2024

Hi,

Which genome browser do you recommend to view the gff file from gffcompare and show cov, FPKM, and TPM in the tracks visually, indicating larger or smaller numbers for those values?
It does not work with IGV for me. I read I need to upload the BAM file but I would like to take advantage of having the cov, FPKM, and TPM displayed in some way, like thicker lines for higher values.

Thank you for your help!

Paty

@pbuendia pbuendia changed the title Which genome browser can visualize FPKM ; TPM in the tracks? How can one visualize GFF files coverage, FPKM ; TPM values in a genome browser? Feb 8, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant