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CMakeLists.txt
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CMakeLists.txt
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cmake_minimum_required(VERSION 3.10)
set(CMAKE_CXX_STANDARD 14)
file(MAKE_DIRECTORY build)
file(MAKE_DIRECTORY install)
#project name
project(TauLeapMethods)
set(CMAKE_BUILD_TYPE "Release")
#add_compile_options(-Ofast)
if (CMAKE_CXX_COMPILER_ID STREQUAL "Clang")
# using Clang
elseif (CMAKE_CXX_COMPILER_ID STREQUAL "GNU")
set( CMAKE_CXX_FLAGS "-Ofast -fopenmp" )
elseif (CMAKE_CXX_COMPILER_ID STREQUAL "Intel")
# using Intel C++
elseif (CMAKE_CXX_COMPILER_ID STREQUAL "MSVC")
# using Visual Studio C++
endif()
macro(print_all_variables)
message(STATUS "print_all_variables------------------------------------------{")
get_cmake_property(_variableNames VARIABLES)
foreach (_variableName ${_variableNames})
message(STATUS "${_variableName}=${${_variableName}}")
endforeach()
message(STATUS "print_all_variables------------------------------------------}")
endmacro()
#print_all_variables()
#executables
add_executable(${PROJECT_NAME} src/main.cpp)
#download submodules
find_package(Git QUIET)
if(GIT_FOUND AND EXISTS "${PROJECT_SOURCE_DIR}/.git")
# Update submodules as needed
option(GIT_SUBMODULE "Check submodules during build" ON)
if(GIT_SUBMODULE)
message(STATUS "Submodule update")
execute_process(COMMAND ${GIT_EXECUTABLE} submodule update --init --recursive
WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}
RESULT_VARIABLE GIT_SUBMOD_RESULT)
if(NOT GIT_SUBMOD_RESULT EQUAL "0")
message(FATAL_ERROR "git submodule update --init --recursive failed with ${GIT_SUBMOD_RESULT}, please checkout submodules")
endif()
endif()
endif()
add_subdirectory(src/cpp)
target_include_directories(${PROJECT_NAME}
PUBLIC src/hpp
PUBLIC external/eigen
PUBLIC external/getpot
)
target_link_directories(${PROJECT_NAME} PRIVATE src/cpp)
target_link_libraries(${PROJECT_NAME}
ChebyshevMethods ChemicalSystem ImplicitTauLeap ChemicalSystem MonteCarlo Parameters ProblemsList
R-tau-ROCK SK-tau-ROCK Solver SplitStepImplicitTau SSA StabilizedTauLeapMethod tau-ROCK TauLeap
TauLeapMethod TrapezoidalTauLeap
)
install(TARGETS ${PROJECT_NAME} DESTINATION .)
# folders to store results
install(DIRECTORY DESTINATION DecayingDimerizing)
install(DIRECTORY DESTINATION Ecoli)
install(DIRECTORY DESTINATION GeneticPositiveFeedbackLoop)
install(DIRECTORY DESTINATION MichaelisMenten)
install(DIRECTORY DESTINATION NonlinearReversibleReaction)
install(DIRECTORY DESTINATION ReversibleIsomerization)
install(DIRECTORY DESTINATION SchloglReaction)
configure_file(${CMAKE_SOURCE_DIR}/src/help.txt ${CMAKE_SOURCE_DIR}/install COPYONLY)
configure_file(${CMAKE_SOURCE_DIR}/src/matlab/Plot_path.m ${CMAKE_SOURCE_DIR}/install COPYONLY)