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Pinf6_run_100_f
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Pinf6_run_100_f
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----------------------------------------------------
STRUCTURE by Pritchard, Stephens and Donnelly (2000)
and Falush, Stephens and Pritchard (2003)
Code by Pritchard and Falush
Version 2.2 (March 2007)
----------------------------------------------------
Command line arguments: bin\structure.exe -m C:\Documents and Settings\grunwaldn\My Documents\Phytophthora clade 1c\SSR\structure\Pinf6\Pinf6\mainparams -e C:\Documents and Settings\grunwaldn\My Documents\Phytophthora clade 1c\SSR\structure\Pinf6\Pinf6\extraparams
Input File: C:\Documents and Settings\grunwaldn\My Documents\Phytophthora clade 1c\SSR\structure\Pinf6\project_data
Run parameters:
135 individuals
11 loci
10 populations assumed
20000 Burn-in period
100000 Reps
--------------------------------------------
Proportion of membership of each pre-defined
population in each of the 10 clusters
Given Inferred Clusters Number of
Pop 1 2 3 4 5 6 7 8 9 10 Individuals
1: 0.003 0.039 0.004 0.004 0.005 0.013 0.917 0.004 0.005 0.006 17
2: 0.126 0.022 0.305 0.009 0.014 0.300 0.079 0.101 0.022 0.022 40
3: 0.026 0.162 0.030 0.175 0.193 0.057 0.007 0.014 0.166 0.171 48
4: 0.014 0.064 0.044 0.049 0.206 0.013 0.033 0.010 0.430 0.137 4
5: 0.185 0.056 0.063 0.019 0.019 0.023 0.008 0.568 0.020 0.039 21
6: 0.006 0.008 0.010 0.024 0.015 0.889 0.006 0.007 0.027 0.008 4
7: 0.019 0.045 0.009 0.008 0.025 0.786 0.010 0.050 0.032 0.017 1
--------------------------------------------
Allele-freq. divergence among pops (Net nucleotide distance),
computed using point estimates of P.
1 2 3 4 5 6 7 8 9 10
1 - 0.6388 0.8540 1.2829 0.7773 1.6252 1.5175 0.7338 0.8491 0.8648
2 0.6388 - 0.7105 0.5059 0.1233 0.5830 0.8062 0.3106 0.1188 0.2173
3 0.8540 0.7105 - 1.0205 0.6786 1.7789 1.9331 0.6072 0.6813 0.7510
4 1.2829 0.5059 1.0205 - 0.5215 0.9257 1.7578 0.9576 0.4433 0.4415
5 0.7773 0.1233 0.6786 0.5215 - 0.7431 1.2141 0.3796 0.0532 0.3649
6 1.6252 0.5830 1.7789 0.9257 0.7431 - 1.1734 0.8903 0.6744 0.9353
7 1.5175 0.8062 1.9331 1.7578 1.2141 1.1734 - 1.2080 1.1690 1.1972
8 0.7338 0.3106 0.6072 0.9576 0.3796 0.8903 1.2080 - 0.4294 0.6921
9 0.8491 0.1188 0.6813 0.4433 0.0532 0.6744 1.1690 0.4294 - 0.3020
10 0.8648 0.2173 0.7510 0.4415 0.3649 0.9353 1.1972 0.6921 0.3020 -
Average distances (expected heterozygosity) between individuals in same cluster:
cluster 1 : -3.1829
cluster 2 : -1.8136
cluster 3 : -4.0904
cluster 4 : -3.7662
cluster 5 : -2.4662
cluster 6 : -3.0436
cluster 7 : -2.9641
cluster 8 : -2.3614
cluster 9 : -2.6222
cluster 10 : -2.8860
--------------------------------------------
Estimated Ln Prob of Data = -2963.5
Mean value of ln likelihood = -2737.3
Variance of ln likelihood = 452.4
Mean value of alpha = 0.0353
Mean value of Fst_1 = 0.4021
Mean value of Fst_2 = 0.0004
Mean value of Fst_3 = 0.5374
Mean value of Fst_4 = 0.4874
Mean value of Fst_5 = 0.1820
Mean value of Fst_6 = 0.3303
Mean value of Fst_7 = 0.3338
Mean value of Fst_8 = 0.2404
Mean value of Fst_9 = 0.2125
Mean value of Fst_10 = 0.2351
Inferred ancestry of individuals:
Label (%Miss) Pop: Inferred clusters
1 PaEC1 (47) 1 : 0.003 0.035 0.003 0.004 0.005 0.004 0.930 0.004 0.006 0.005
2 PaEC10 (47) 1 : 0.003 0.004 0.003 0.004 0.003 0.003 0.968 0.004 0.004 0.003
3 PaEC11 (47) 1 : 0.003 0.009 0.003 0.007 0.012 0.003 0.942 0.004 0.008 0.009
4 PaEC12 (52) 1 : 0.003 0.004 0.003 0.003 0.003 0.004 0.971 0.003 0.003 0.003
5 PaEC13 (45) 1 : 0.003 0.296 0.003 0.009 0.006 0.004 0.650 0.009 0.005 0.016
6 PaEC14 (47) 1 : 0.004 0.004 0.003 0.004 0.003 0.004 0.966 0.003 0.004 0.005
7 PaEC15 (47) 1 : 0.003 0.004 0.004 0.004 0.003 0.006 0.964 0.003 0.004 0.005
8 PaEC2 (45) 1 : 0.003 0.003 0.003 0.003 0.003 0.004 0.971 0.003 0.004 0.003
9 PaEC3 (45) 1 : 0.003 0.004 0.002 0.003 0.003 0.004 0.971 0.003 0.004 0.003
10 PaEC4 (45) 1 : 0.003 0.004 0.003 0.003 0.003 0.004 0.969 0.004 0.004 0.003
11 PaEC5 (47) 1 : 0.004 0.007 0.004 0.004 0.005 0.139 0.824 0.004 0.005 0.005
12 PaEC6 (47) 1 : 0.004 0.004 0.005 0.005 0.004 0.009 0.957 0.004 0.004 0.006
13 PaEC7 (50) 1 : 0.003 0.004 0.003 0.003 0.003 0.003 0.973 0.003 0.003 0.003
14 PaEC8 (45) 1 : 0.004 0.273 0.009 0.007 0.010 0.006 0.653 0.005 0.013 0.020
15 PaEC9 (47) 1 : 0.003 0.004 0.003 0.003 0.003 0.003 0.971 0.004 0.003 0.003
16 PaPE1 (52) 1 : 0.003 0.005 0.004 0.005 0.004 0.013 0.952 0.005 0.004 0.006
17 PaPE2 (52) 1 : 0.003 0.005 0.004 0.005 0.004 0.013 0.953 0.004 0.004 0.006
18 PiCO1 (47) 2 : 0.006 0.004 0.952 0.007 0.005 0.004 0.003 0.008 0.005 0.005
19 PiCO2 (47) 2 : 0.006 0.004 0.954 0.006 0.006 0.004 0.003 0.007 0.006 0.005
20 PiCO3 (47) 2 : 0.006 0.004 0.951 0.007 0.005 0.004 0.003 0.007 0.006 0.006
21 PiCO4 (47) 2 : 0.006 0.004 0.952 0.007 0.005 0.004 0.003 0.007 0.005 0.006
22 PiCO5 (50) 2 : 0.013 0.036 0.066 0.008 0.098 0.005 0.071 0.011 0.256 0.434
23 PiEC1 (50) 2 : 0.007 0.004 0.950 0.006 0.006 0.004 0.003 0.006 0.006 0.006
24 PiEC10 (47) 2 : 0.006 0.006 0.005 0.005 0.004 0.943 0.014 0.006 0.005 0.006
25 PiEC11 (47) 2 : 0.004 0.007 0.008 0.006 0.005 0.948 0.005 0.005 0.006 0.006
26 PiEC12 (47) 2 : 0.006 0.006 0.008 0.010 0.006 0.939 0.004 0.007 0.006 0.007
27 PiEC13 (45) 2 : 0.004 0.005 0.005 0.006 0.005 0.954 0.004 0.006 0.005 0.005
28 PiEC14 (45) 2 : 0.004 0.005 0.005 0.007 0.005 0.954 0.004 0.006 0.005 0.005
29 PiEC2 (47) 2 : 0.006 0.011 0.857 0.009 0.022 0.029 0.003 0.011 0.043 0.008
30 PiEC3 (50) 2 : 0.005 0.004 0.950 0.008 0.005 0.004 0.003 0.008 0.006 0.006
31 PiEC4 (47) 2 : 0.004 0.005 0.004 0.005 0.004 0.007 0.959 0.003 0.004 0.005
32 PiEC5 (52) 2 : 0.003 0.017 0.003 0.005 0.024 0.010 0.902 0.009 0.013 0.015
33 PiEC6 (43) 2 : 0.013 0.198 0.007 0.026 0.031 0.644 0.013 0.012 0.017 0.038
34 PiEC7 (50) 2 : 0.005 0.021 0.011 0.033 0.036 0.149 0.626 0.019 0.084 0.016
35 PiEC8 (50) 2 : 0.004 0.035 0.006 0.013 0.109 0.244 0.395 0.006 0.168 0.020
36 PiPE1 (47) 2 : 0.963 0.003 0.008 0.004 0.004 0.003 0.003 0.005 0.003 0.004
37 PiPE10 (50) 2 : 0.006 0.006 0.028 0.006 0.006 0.008 0.005 0.916 0.006 0.012
38 PiPE11 (47) 2 : 0.960 0.004 0.006 0.005 0.004 0.003 0.003 0.004 0.004 0.005
39 PiPE12 (47) 2 : 0.960 0.004 0.007 0.005 0.004 0.004 0.004 0.004 0.004 0.005
40 PiPE13 (45) 2 : 0.956 0.007 0.006 0.005 0.004 0.005 0.003 0.004 0.004 0.005
41 PiPE14 (47) 2 : 0.961 0.004 0.006 0.005 0.004 0.004 0.004 0.004 0.004 0.005
42 PiPE2 (47) 2 : 0.008 0.008 0.905 0.018 0.010 0.013 0.007 0.009 0.011 0.012
43 PiPE20 (43) 2 : 0.048 0.279 0.007 0.007 0.017 0.562 0.008 0.044 0.017 0.013
44 PiPE21 (45) 2 : 0.004 0.008 0.018 0.016 0.007 0.912 0.004 0.011 0.008 0.011
45 PiPE22 (45) 2 : 0.003 0.005 0.004 0.005 0.005 0.960 0.004 0.005 0.005 0.004
46 PiPE23 (45) 2 : 0.004 0.011 0.004 0.005 0.036 0.844 0.012 0.016 0.058 0.009
47 PiPE24 (45) 2 : 0.003 0.005 0.004 0.005 0.005 0.960 0.004 0.005 0.005 0.005
48 PiPE25 (45) 2 : 0.003 0.005 0.004 0.005 0.005 0.960 0.004 0.005 0.005 0.005
49 PiPE26 (50) 2 : 0.005 0.006 0.029 0.007 0.006 0.009 0.005 0.916 0.006 0.011
50 PiPE27 (45) 2 : 0.005 0.079 0.006 0.009 0.010 0.861 0.004 0.008 0.009 0.009
51 PiPE3 (47) 2 : 0.013 0.032 0.750 0.022 0.019 0.005 0.007 0.041 0.027 0.083
52 PiPE4 (47) 2 : 0.007 0.010 0.853 0.014 0.007 0.019 0.010 0.049 0.007 0.024
53 PiPE5 (47) 2 : 0.005 0.005 0.957 0.005 0.005 0.004 0.003 0.005 0.005 0.005
54 PiPE6 (50) 2 : 0.006 0.010 0.026 0.006 0.015 0.004 0.009 0.904 0.010 0.010
55 PiPE7 (50) 2 : 0.010 0.012 0.024 0.006 0.007 0.004 0.010 0.911 0.007 0.007
56 PiPE8 (47) 2 : 0.008 0.008 0.906 0.017 0.010 0.012 0.007 0.009 0.010 0.013
57 PiPE9 (50) 2 : 0.006 0.004 0.957 0.005 0.005 0.004 0.003 0.007 0.005 0.004
58 PiMX1 (50) 3 : 0.007 0.016 0.021 0.015 0.285 0.012 0.004 0.030 0.571 0.038
59 PiMX10 (50) 3 : 0.006 0.073 0.009 0.022 0.093 0.018 0.013 0.011 0.142 0.613
60 PiMX11 (54) 3 : 0.015 0.048 0.260 0.212 0.116 0.015 0.004 0.027 0.092 0.210
61 PiMX12 (50) 3 : 0.007 0.221 0.013 0.009 0.407 0.008 0.017 0.036 0.095 0.187
62 PiMX13 (54) 3 : 0.012 0.060 0.048 0.514 0.040 0.007 0.004 0.015 0.030 0.271
63 PiMX14 (50) 3 : 0.007 0.177 0.042 0.124 0.277 0.014 0.005 0.012 0.143 0.198
64 PiMX15 (50) 3 : 0.005 0.014 0.010 0.008 0.028 0.867 0.017 0.007 0.026 0.019
65 PiMX16 (50) 3 : 0.084 0.234 0.005 0.026 0.042 0.008 0.004 0.029 0.033 0.536
66 PiMX17 (50) 3 : 0.006 0.015 0.010 0.036 0.325 0.015 0.005 0.008 0.567 0.011
67 PiMX18 (50) 3 : 0.010 0.055 0.008 0.115 0.122 0.377 0.005 0.073 0.115 0.120
68 PiMX19 (50) 3 : 0.008 0.195 0.010 0.007 0.435 0.066 0.003 0.010 0.181 0.084
69 PiMX2 (50) 3 : 0.009 0.509 0.009 0.040 0.180 0.033 0.003 0.010 0.113 0.094
70 PiMX20 (50) 3 : 0.008 0.468 0.017 0.015 0.266 0.044 0.007 0.011 0.129 0.036
71 PiMX21 (45) 3 : 0.007 0.569 0.007 0.024 0.111 0.015 0.003 0.020 0.186 0.059
72 PiMX22 (50) 3 : 0.005 0.484 0.012 0.013 0.138 0.009 0.014 0.008 0.279 0.038
73 PiMX23 (50) 3 : 0.233 0.247 0.016 0.018 0.153 0.007 0.006 0.012 0.211 0.097
74 PiMX24 (50) 3 : 0.018 0.160 0.112 0.134 0.137 0.006 0.007 0.017 0.153 0.256
75 PiMX25 (50) 3 : 0.014 0.092 0.323 0.281 0.071 0.099 0.007 0.020 0.032 0.061
76 PiMX26 (54) 3 : 0.012 0.225 0.008 0.042 0.238 0.019 0.008 0.036 0.340 0.072
77 PiMX27 (45) 3 : 0.005 0.212 0.067 0.297 0.097 0.009 0.012 0.004 0.094 0.202
78 PiMX28 (54) 3 : 0.006 0.110 0.024 0.167 0.070 0.049 0.019 0.022 0.074 0.457
79 PiMX29 (50) 3 : 0.183 0.618 0.010 0.022 0.038 0.034 0.005 0.011 0.033 0.047
80 PiMX3 (50) 3 : 0.005 0.298 0.012 0.010 0.250 0.004 0.005 0.005 0.054 0.355
81 PiMX30 (50) 3 : 0.004 0.092 0.006 0.018 0.036 0.011 0.004 0.006 0.109 0.715
82 PiMX4 (50) 3 : 0.009 0.348 0.021 0.005 0.278 0.005 0.004 0.010 0.045 0.275
83 PiMX40 (50) 3 : 0.004 0.106 0.009 0.149 0.193 0.010 0.007 0.005 0.377 0.141
84 PiMX41 (54) 3 : 0.006 0.044 0.019 0.059 0.023 0.773 0.004 0.010 0.035 0.028
85 PiMX42 (50) 3 : 0.398 0.031 0.117 0.109 0.036 0.005 0.004 0.047 0.076 0.176
86 PiMX43 (50) 3 : 0.004 0.004 0.005 0.959 0.006 0.005 0.003 0.004 0.006 0.005
87 PiMX44 (50) 3 : 0.004 0.004 0.007 0.955 0.006 0.005 0.003 0.004 0.006 0.006
88 PiMX45 (50) 3 : 0.004 0.005 0.007 0.955 0.006 0.005 0.003 0.004 0.006 0.006
89 PiMX46 (50) 3 : 0.004 0.005 0.006 0.956 0.006 0.005 0.003 0.004 0.006 0.006
90 PiMX47 (50) 3 : 0.004 0.004 0.007 0.954 0.007 0.005 0.003 0.004 0.006 0.006
91 PiMX48 (50) 3 : 0.004 0.005 0.009 0.294 0.005 0.004 0.004 0.005 0.005 0.664
92 PiMX49 (50) 3 : 0.004 0.005 0.009 0.293 0.005 0.004 0.004 0.005 0.005 0.665
93 PiMX5 (50) 3 : 0.005 0.006 0.007 0.007 0.586 0.007 0.003 0.006 0.367 0.006
94 PiMX50 (50) 3 : 0.004 0.006 0.009 0.294 0.004 0.004 0.004 0.005 0.005 0.664
95 PiMX6 (54) 3 : 0.009 0.161 0.040 0.024 0.462 0.005 0.004 0.013 0.261 0.021
96 PiMX7 (50) 3 : 0.006 0.006 0.014 0.006 0.583 0.004 0.003 0.007 0.365 0.006
97 PiMXT1 (50) 3 : 0.006 0.308 0.010 0.023 0.167 0.014 0.003 0.014 0.098 0.357
98 PiMXT2 (54) 3 : 0.005 0.306 0.006 0.043 0.107 0.023 0.004 0.011 0.193 0.301
99 PiMXT3 (50) 3 : 0.005 0.022 0.016 0.006 0.298 0.018 0.030 0.029 0.568 0.007
100 PiMXT4 (47) 3 : 0.004 0.162 0.006 0.014 0.553 0.006 0.003 0.005 0.234 0.013
101 PiMXT5 (50) 3 : 0.059 0.725 0.006 0.012 0.085 0.015 0.003 0.012 0.071 0.012
102 PiMXT6 (50) 3 : 0.004 0.013 0.010 0.008 0.311 0.011 0.006 0.006 0.619 0.013
103 PiMXT7 (54) 3 : 0.008 0.299 0.007 0.016 0.286 0.026 0.020 0.030 0.287 0.020
104 PiMXt48 (59) 3 : 0.006 0.010 0.008 0.028 0.659 0.005 0.004 0.008 0.264 0.007
105 PiMXt68 (50) 3 : 0.005 0.011 0.006 0.047 0.655 0.004 0.003 0.005 0.256 0.007
106 PiUS11 (47) 4 : 0.029 0.139 0.076 0.025 0.294 0.007 0.051 0.013 0.308 0.057
107 PiUS12 (50) 4 : 0.005 0.020 0.009 0.084 0.221 0.024 0.003 0.006 0.609 0.020
108 PiUS17 (54) 4 : 0.008 0.063 0.019 0.078 0.209 0.015 0.010 0.011 0.548 0.040
109 PiUS8 (50) 4 : 0.014 0.034 0.071 0.009 0.098 0.005 0.069 0.010 0.257 0.434
110 PiES1 (50) 5 : 0.667 0.017 0.064 0.004 0.011 0.006 0.003 0.211 0.010 0.006
111 PiES2 (50) 5 : 0.150 0.100 0.040 0.030 0.029 0.096 0.013 0.469 0.025 0.047
112 PiES3 (59) 5 : 0.006 0.007 0.011 0.005 0.006 0.009 0.012 0.931 0.007 0.005
113 PiHU1 (50) 5 : 0.555 0.012 0.006 0.004 0.012 0.014 0.011 0.368 0.010 0.006
114 PiHU2 (50) 5 : 0.009 0.055 0.023 0.009 0.024 0.008 0.007 0.756 0.018 0.091
115 PiNL1 (50) 5 : 0.008 0.029 0.600 0.085 0.018 0.014 0.016 0.118 0.015 0.098
116 PiNL2 (50) 5 : 0.528 0.114 0.042 0.055 0.024 0.008 0.006 0.026 0.024 0.174
117 PiPO1 (50) 5 : 0.261 0.010 0.068 0.005 0.011 0.005 0.007 0.615 0.010 0.009
118 PiPO2 (50) 5 : 0.670 0.016 0.017 0.019 0.019 0.006 0.005 0.222 0.021 0.005
119 PiSW1 (50) 5 : 0.017 0.008 0.109 0.012 0.007 0.005 0.005 0.817 0.009 0.013
120 PiSW2 (50) 5 : 0.516 0.052 0.013 0.020 0.044 0.007 0.003 0.305 0.032 0.007
121 PiUK1 (47) 5 : 0.153 0.426 0.035 0.031 0.040 0.049 0.005 0.114 0.022 0.125
122 PiUK10 (50) 5 : 0.013 0.006 0.010 0.005 0.005 0.005 0.005 0.941 0.005 0.006
123 PiUK2 (50) 5 : 0.011 0.007 0.011 0.010 0.008 0.011 0.004 0.921 0.009 0.007
124 PiUK3 (50) 5 : 0.017 0.016 0.021 0.021 0.014 0.019 0.011 0.843 0.022 0.015
125 PiUK4 (50) 5 : 0.017 0.019 0.020 0.021 0.014 0.018 0.011 0.841 0.021 0.016
126 PiUK5 (45) 5 : 0.031 0.021 0.024 0.027 0.029 0.011 0.005 0.816 0.029 0.007
127 PiUK6 (50) 5 : 0.007 0.026 0.019 0.010 0.015 0.016 0.006 0.874 0.012 0.017
128 PiUK7 (54) 5 : 0.060 0.033 0.006 0.009 0.016 0.134 0.011 0.688 0.024 0.018
129 PiUK8 (52) 5 : 0.039 0.142 0.016 0.009 0.037 0.009 0.021 0.587 0.071 0.069
130 PiUK9 (50) 5 : 0.146 0.060 0.175 0.012 0.023 0.023 0.009 0.456 0.016 0.081
131 PiVT1 (47) 6 : 0.005 0.006 0.004 0.028 0.010 0.921 0.005 0.005 0.010 0.006
132 PiVT2 (45) 6 : 0.007 0.010 0.012 0.031 0.024 0.845 0.008 0.008 0.044 0.010
133 PiVT3 (47) 6 : 0.004 0.006 0.010 0.005 0.006 0.946 0.004 0.005 0.007 0.005
134 PiVT4 (45) 6 : 0.008 0.011 0.013 0.030 0.023 0.844 0.008 0.008 0.045 0.010
135 PiSA1 (45) 7 : 0.019 0.045 0.009 0.008 0.025 0.786 0.010 0.050 0.032 0.017
Estimated Allele Frequencies in each cluster
First column gives estimated ancestral frequencies
Locus 1 :
10 alleles
98.9% missing data
160 (0.398) 0.263 0.398 0.068 0.525 0.330 0.945 0.785 0.153 0.390 0.508
158 (0.064) 0.005 0.064 0.004 0.359 0.022 0.009 0.187 0.006 0.022 0.024
162 (0.280) 0.608 0.280 0.909 0.043 0.431 0.019 0.015 0.769 0.381 0.213
154 (0.024) 0.002 0.024 0.001 0.002 0.005 0.015 0.001 0.002 0.004 0.005
164 (0.050) 0.012 0.050 0.011 0.048 0.019 0.003 0.003 0.006 0.019 0.175
170 (0.024) 0.002 0.024 0.001 0.002 0.014 0.001 0.001 0.002 0.008 0.005
152 (0.076) 0.101 0.075 0.003 0.013 0.059 0.004 0.004 0.054 0.117 0.023
166 (0.027) 0.002 0.027 0.001 0.002 0.023 0.001 0.001 0.002 0.007 0.026
156 (0.031) 0.003 0.031 0.001 0.003 0.012 0.002 0.002 0.003 0.014 0.016
150 (0.026) 0.002 0.026 0.001 0.004 0.085 0.001 0.001 0.002 0.037 0.005
Locus 2 :
26 alleles
104.1% missing data
108 (0.030) 0.002 0.030 0.001 0.002 0.013 0.002 0.594 0.003 0.025 0.034
152 (0.031) 0.002 0.031 0.001 0.002 0.007 0.002 0.049 0.030 0.006 0.007
148 (0.038) 0.003 0.038 0.002 0.015 0.049 0.002 0.019 0.005 0.024 0.034
150 (0.028) 0.002 0.028 0.001 0.010 0.009 0.002 0.049 0.003 0.009 0.013
138 (0.035) 0.002 0.035 0.001 0.003 0.015 0.196 0.023 0.004 0.010 0.008
142 (0.066) 0.004 0.065 0.015 0.044 0.015 0.202 0.160 0.134 0.014 0.131
146 (0.038) 0.003 0.038 0.002 0.003 0.025 0.002 0.070 0.064 0.012 0.016
136 (0.139) 0.343 0.139 0.669 0.543 0.049 0.158 0.007 0.332 0.049 0.300
132 (0.020) 0.001 0.020 0.065 0.001 0.004 0.001 0.001 0.002 0.004 0.004
112 (0.050) 0.004 0.050 0.002 0.011 0.179 0.003 0.003 0.006 0.131 0.123
134 (0.048) 0.027 0.048 0.215 0.009 0.019 0.048 0.002 0.010 0.020 0.021
144 (0.048) 0.003 0.048 0.011 0.017 0.082 0.263 0.003 0.007 0.196 0.018
118 (0.044) 0.266 0.044 0.001 0.004 0.012 0.003 0.002 0.137 0.011 0.045
154 (0.033) 0.299 0.033 0.001 0.002 0.007 0.002 0.002 0.155 0.007 0.007
140 (0.061) 0.004 0.062 0.002 0.011 0.180 0.100 0.003 0.007 0.243 0.024
158 (0.028) 0.015 0.028 0.001 0.004 0.016 0.002 0.001 0.012 0.011 0.008
184 (0.021) 0.001 0.021 0.001 0.002 0.010 0.001 0.001 0.002 0.008 0.007
174 (0.026) 0.002 0.027 0.001 0.002 0.029 0.001 0.001 0.003 0.026 0.007
176 (0.027) 0.002 0.027 0.001 0.002 0.013 0.001 0.001 0.003 0.017 0.006
110 (0.034) 0.004 0.035 0.002 0.003 0.163 0.002 0.002 0.004 0.114 0.011
164 (0.030) 0.003 0.030 0.001 0.300 0.007 0.002 0.001 0.003 0.007 0.007
188 (0.036) 0.002 0.036 0.001 0.003 0.038 0.002 0.002 0.004 0.017 0.062
190 (0.026) 0.002 0.026 0.001 0.002 0.024 0.001 0.001 0.003 0.008 0.029
104 (0.024) 0.001 0.023 0.001 0.002 0.007 0.001 0.001 0.003 0.012 0.068
172 (0.019) 0.001 0.019 0.001 0.002 0.023 0.001 0.001 0.002 0.014 0.005
130 (0.019) 0.001 0.019 0.001 0.002 0.005 0.001 0.001 0.060 0.004 0.005
Locus 3 :
3 alleles
100.0% missing data
203 (0.936) 0.896 0.936 0.998 0.996 0.982 0.997 0.997 0.852 0.986 0.975
209 (0.025) 0.002 0.025 0.001 0.002 0.010 0.001 0.001 0.002 0.007 0.017
206 (0.039) 0.102 0.038 0.002 0.003 0.008 0.002 0.002 0.146 0.007 0.008
Locus 4 :
4 alleles
100.7% missing data
166 (0.351) 0.038 0.350 0.509 0.452 0.365 0.436 0.223 0.472 0.356 0.267
170 (0.553) 0.107 0.553 0.488 0.541 0.607 0.559 0.772 0.507 0.617 0.710
160 (0.036) 0.382 0.036 0.001 0.003 0.010 0.002 0.002 0.007 0.010 0.009
168 (0.060) 0.473 0.061 0.002 0.004 0.018 0.003 0.003 0.014 0.017 0.014
Locus 5 :
21 alleles
86.7% missing data
209 (0.079) 0.008 0.080 0.002 0.009 0.122 0.005 0.197 0.008 0.229 0.031
247 (0.020) 0.002 0.020 0.000 0.001 0.004 0.001 0.188 0.002 0.003 0.003
287 (0.022) 0.002 0.022 0.001 0.001 0.005 0.001 0.013 0.002 0.004 0.004
251 (0.021) 0.001 0.021 0.000 0.001 0.004 0.001 0.086 0.002 0.003 0.004
263 (0.020) 0.001 0.020 0.000 0.001 0.004 0.001 0.086 0.002 0.003 0.004
267 (0.021) 0.002 0.020 0.000 0.001 0.004 0.001 0.086 0.002 0.003 0.004
213 (0.321) 0.346 0.321 0.329 0.927 0.338 0.588 0.142 0.160 0.444 0.691
235 (0.020) 0.002 0.020 0.000 0.001 0.004 0.001 0.003 0.002 0.003 0.004
261 (0.020) 0.001 0.020 0.000 0.001 0.004 0.001 0.003 0.002 0.004 0.004
265 (0.018) 0.001 0.018 0.000 0.001 0.004 0.001 0.003 0.002 0.003 0.004
255 (0.023) 0.002 0.023 0.001 0.001 0.005 0.001 0.068 0.002 0.004 0.004
283 (0.019) 0.001 0.019 0.000 0.001 0.004 0.001 0.052 0.002 0.003 0.003
269 (0.019) 0.001 0.019 0.000 0.001 0.004 0.001 0.003 0.002 0.004 0.005
273 (0.022) 0.002 0.022 0.001 0.002 0.005 0.001 0.003 0.002 0.004 0.005
281 (0.018) 0.001 0.018 0.000 0.001 0.004 0.001 0.003 0.002 0.004 0.004
271 (0.021) 0.002 0.020 0.000 0.001 0.004 0.001 0.051 0.002 0.003 0.003
205 (0.041) 0.028 0.041 0.321 0.003 0.009 0.002 0.001 0.350 0.008 0.008
217 (0.188) 0.540 0.189 0.339 0.036 0.437 0.313 0.007 0.447 0.217 0.099
225 (0.033) 0.003 0.033 0.001 0.003 0.024 0.002 0.001 0.003 0.042 0.103
221 (0.028) 0.004 0.028 0.001 0.002 0.007 0.069 0.001 0.003 0.005 0.007
215 (0.026) 0.050 0.026 0.001 0.002 0.006 0.007 0.001 0.003 0.005 0.006
Locus 6 :
7 alleles
101.9% missing data
176 (0.095) 0.008 0.094 0.008 0.010 0.033 0.462 0.525 0.366 0.037 0.024
186 (0.024) 0.002 0.023 0.001 0.002 0.006 0.001 0.020 0.002 0.005 0.005
178 (0.695) 0.976 0.696 0.985 0.646 0.664 0.517 0.445 0.612 0.725 0.872
174 (0.066) 0.006 0.065 0.003 0.006 0.111 0.013 0.004 0.008 0.123 0.069
172 (0.070) 0.005 0.070 0.002 0.327 0.112 0.004 0.004 0.007 0.064 0.015
182 (0.024) 0.002 0.024 0.001 0.006 0.012 0.001 0.001 0.002 0.018 0.010
168 (0.027) 0.002 0.027 0.001 0.004 0.062 0.001 0.001 0.002 0.028 0.005
Locus 7 :
25 alleles
95.2% missing data
128 (0.024) 0.003 0.024 0.001 0.002 0.013 0.001 0.204 0.002 0.013 0.006
202 (0.017) 0.001 0.017 0.000 0.001 0.003 0.001 0.123 0.002 0.003 0.003
130 (0.021) 0.002 0.021 0.001 0.001 0.004 0.001 0.268 0.002 0.003 0.004
160 (0.086) 0.026 0.087 0.016 0.011 0.064 0.015 0.150 0.214 0.125 0.075
166 (0.047) 0.004 0.046 0.001 0.042 0.014 0.003 0.006 0.175 0.013 0.144
200 (0.043) 0.003 0.042 0.001 0.003 0.012 0.288 0.177 0.004 0.013 0.025
156 (0.168) 0.023 0.168 0.921 0.410 0.223 0.078 0.013 0.209 0.355 0.392
152 (0.018) 0.001 0.018 0.000 0.001 0.004 0.309 0.001 0.002 0.003 0.003
162 (0.074) 0.013 0.075 0.003 0.006 0.033 0.151 0.004 0.092 0.030 0.085
164 (0.059) 0.005 0.059 0.002 0.004 0.121 0.020 0.030 0.006 0.048 0.055
150 (0.026) 0.022 0.026 0.001 0.005 0.008 0.006 0.002 0.003 0.007 0.015
204 (0.029) 0.005 0.029 0.001 0.003 0.024 0.007 0.002 0.004 0.013 0.032
140 (0.024) 0.396 0.024 0.001 0.002 0.005 0.001 0.001 0.008 0.004 0.007
148 (0.020) 0.244 0.020 0.001 0.001 0.004 0.001 0.001 0.002 0.003 0.003
154 (0.064) 0.083 0.064 0.003 0.005 0.027 0.020 0.003 0.178 0.032 0.016
198 (0.019) 0.004 0.020 0.001 0.001 0.004 0.007 0.001 0.003 0.004 0.004
170 (0.017) 0.002 0.017 0.001 0.001 0.004 0.013 0.001 0.002 0.004 0.004
158 (0.024) 0.002 0.024 0.035 0.038 0.013 0.001 0.001 0.004 0.011 0.031
206 (0.086) 0.127 0.086 0.003 0.445 0.203 0.056 0.005 0.047 0.133 0.043
208 (0.038) 0.027 0.038 0.003 0.003 0.011 0.003 0.002 0.030 0.009 0.033
212 (0.017) 0.002 0.017 0.001 0.004 0.005 0.013 0.001 0.002 0.005 0.005
210 (0.020) 0.002 0.020 0.001 0.001 0.135 0.001 0.001 0.002 0.084 0.003
266 (0.017) 0.001 0.017 0.000 0.001 0.023 0.001 0.001 0.002 0.011 0.003
246 (0.021) 0.002 0.021 0.001 0.002 0.025 0.001 0.001 0.003 0.026 0.005
132 (0.020) 0.002 0.020 0.001 0.007 0.018 0.001 0.001 0.002 0.050 0.005
Locus 8 :
3 alleles
99.6% missing data
174 (0.232) 0.317 0.232 0.494 0.074 0.268 0.014 0.456 0.169 0.197 0.233
176 (0.735) 0.680 0.735 0.505 0.923 0.703 0.984 0.542 0.828 0.787 0.761
154 (0.033) 0.003 0.033 0.001 0.002 0.029 0.002 0.002 0.003 0.016 0.006
Locus 9 :
3 alleles
93.3% missing data
148 (0.161) 0.055 0.161 0.005 0.012 0.080 0.321 0.379 0.193 0.090 0.038
151 (0.218) 0.076 0.218 0.008 0.028 0.143 0.357 0.589 0.235 0.161 0.114
157 (0.621) 0.869 0.621 0.987 0.960 0.777 0.322 0.032 0.572 0.748 0.848
Locus 10 :
3 alleles
101.5% missing data
192 (0.863) 0.987 0.863 0.993 0.982 0.939 0.457 0.992 0.717 0.950 0.956
189 (0.104) 0.010 0.105 0.006 0.016 0.054 0.541 0.006 0.011 0.043 0.037
195 (0.033) 0.003 0.033 0.001 0.002 0.007 0.002 0.002 0.272 0.006 0.007
Locus 11 :
13 alleles
101.9% missing data
181 (0.164) 0.795 0.163 0.498 0.012 0.057 0.115 0.833 0.327 0.079 0.090
183 (0.029) 0.002 0.029 0.001 0.002 0.006 0.001 0.105 0.003 0.005 0.005
179 (0.390) 0.145 0.390 0.471 0.761 0.688 0.858 0.036 0.579 0.703 0.158
197 (0.114) 0.015 0.114 0.019 0.165 0.094 0.007 0.007 0.027 0.082 0.471
199 (0.083) 0.021 0.084 0.004 0.016 0.038 0.005 0.005 0.040 0.045 0.157
191 (0.023) 0.002 0.023 0.001 0.020 0.007 0.001 0.001 0.002 0.005 0.015
203 (0.023) 0.002 0.023 0.001 0.006 0.015 0.001 0.001 0.002 0.009 0.011
201 (0.030) 0.003 0.030 0.002 0.004 0.028 0.002 0.002 0.003 0.018 0.017
213 (0.021) 0.002 0.021 0.001 0.001 0.014 0.001 0.001 0.002 0.008 0.005
205 (0.033) 0.003 0.033 0.001 0.002 0.013 0.002 0.002 0.003 0.020 0.008
209 (0.040) 0.003 0.040 0.001 0.008 0.021 0.003 0.003 0.004 0.015 0.041
207 (0.024) 0.002 0.024 0.001 0.001 0.014 0.001 0.001 0.002 0.005 0.013
195 (0.024) 0.005 0.024 0.001 0.002 0.006 0.002 0.001 0.004 0.005 0.009
Values of parameters used in structure:
DATAFILE=C:\Documents and Settings\grunwaldn\My Documents\Phytophthora clade 1c\SSR\structure\Pinf6\project_data, OUTFILE=C:\Documents and Settings\grunwaldn\My Documents\Phytophthora clade 1c\SSR\structure\Pinf6\Pinf6\Results\Pinf6_run_100, NUMINDS=135, NUMLOCI=11, MISSING=-9, LABEL=1, POPDATA=1, POPFLAG=0, PHENOTYPE=0, EXTRACOLS=0, MAXPOPS=10, BURNIN=20000, NUMREPS=100000, USEPOPINFO=0, INFERALPHA=1, INFERLAMBDA=0, POPSPECIFICLAMBDA=0, POPALPHAS=0, COMPUTEPROB=1, NOADMIX=0, ADMBURNIN=2500, UPDATEFREQ=1, PRINTLIKES=0, INTERMEDSAVE=0, PRINTKLD=0, PRINTNET=0, PRINTLAMBDA=0, ANCESTDIST=0, NUMBOXES=1000, ANCESTPINT=0.90000, GENSBACK=2, MIGRPRIOR=0.05000, PRINTQHAT=0, PRINTQSUM=0, ALPHA=1.0000, FREQSCORR=1, FPRIORMEAN=0.0100, FPRIORSD=0.0500, ONEFST=0, LAMBDA=1.0000, UNIFPRIORALPHA=1, ALPHAMAX=10.0000, ALPHAPRIORA=1.0000, ALPHAPRIORB=2.0000, ALPHAPROPSD=0.0250, STARTATPOPINFO=0, RANDOMIZE=1, SEED=1241684845, LINKAGE=0, METROFREQ=10, REPORTHITRATE=0, MARKOVPHASE=-1, PHASED=0, PLOIDY=4, PHASEINFO=0
[STRAT parameters]: NUMSIMSTATS=1000, PHENOTYPECOL=-9, POOLFREQ=10, LOCUSxONLY=0, EMERROR=0.00100, MISSINGPHENO=-9,