DESCRIPTION

Package: demulticoder
Title: An R Package for the Integrated Analysis of Multiplex Metabarcodes
Version: 0.0.0.9000
Authors@R: c(person("Martha A.", "Sudermann", email = "sudermam@oregonstate.edu", role = c("aut", "cre")), person("Zachary S. L", "Foster", role = "aut"), person("Hung", "Phan", role = "aut"), person("Samantha", "Dawson", role = "aut"), person("Jeff", "H. Chang", role = "aut"), person("Niklaus", "Grünwald", role = "aut")) 
Description: The demulticoder package provides a workflow for analyzing 
   multiplex metabarcoding data. It includes functions for filtering, 
   trimming primers, and denoising data using Cutadapt and the dada2 package.
   The package can handle datasets with pooled amplicons and simple 
   experimental designs.
License: MIT
Encoding: UTF-8
Depends:
   R (>= 3.0.2)  
Imports:
   furrr,
   purrr,
   readr,
   stringr,
   tidyr,
   dplyr,
   ggplot2,
   tibble,
   utils,
   metacoder,
   knitr,
Suggests:
    BiocManager,
    Biostrings,
    dada2,
    ShortRead,
    phyloseq,
    testthat (>= 3.0.0),
    rmarkdown,
    RcppParallel,
Roxygen: list(markdown = TRUE)
Config/testthat/edition: 3
LazyData: true
URL: https://grunwaldlab.github.io/demulticoder/
BugReports: https://github.com/grunwaldlab/demulticoder/issues
RoxygenNote: 7.3.2
VignetteBuilder: knitr