From 7b603d81d858e6fc064f3f3321aa403e3f895c65 Mon Sep 17 00:00:00 2001 From: Martha Sudermann Date: Fri, 26 Jul 2024 19:34:59 -0700 Subject: [PATCH] Update website --- docs/404.html | 2 +- docs/LICENSE-text.html | 2 +- docs/articles/01_getting_started.html | 6 +++--- docs/articles/02_documentation.html | 2 +- docs/articles/03_mixed_barcode_example.html | 6 +++--- .../Heatree demonstration rps10-1.png | Bin 89349 -> 88449 bytes docs/articles/index.html | 2 +- docs/authors.html | 14 +++++++------- docs/index.html | 4 ++-- docs/pkgdown.yml | 2 +- docs/reference/add_pid_to_tax.html | 2 +- docs/reference/assignTax_as_char.html | 2 +- docs/reference/assign_tax.html | 8 ++++---- docs/reference/assign_taxonomyDada2.html | 2 +- .../reference/convert_asv_matrix_to_objs.html | 8 ++++---- docs/reference/countOverlap.html | 2 +- docs/reference/createASVSequenceTable.html | 2 +- docs/reference/cut_trim.html | 4 ++-- docs/reference/filter_and_trim.html | 2 +- docs/reference/format_abund_matrix.html | 2 +- docs/reference/format_database.html | 2 +- docs/reference/format_db_16S.html | 2 +- docs/reference/format_db_its.html | 2 +- docs/reference/format_db_other1.html | 2 +- docs/reference/format_db_other2.html | 2 +- docs/reference/format_db_rps10.html | 2 +- docs/reference/get_fastq_paths.html | 2 +- docs/reference/get_pids.html | 2 +- docs/reference/get_post_trim_hits.html | 2 +- docs/reference/get_pre_primer_hits.html | 2 +- docs/reference/get_read_counts.html | 2 +- docs/reference/get_ref_seq.html | 2 +- docs/reference/index.html | 2 +- docs/reference/infer_asv_command.html | 2 +- docs/reference/infer_asvs.html | 2 +- docs/reference/make_abund_matrix.html | 2 +- docs/reference/make_asv_abund_matrix.html | 8 ++++---- docs/reference/make_cutadapt_tibble.html | 2 +- docs/reference/make_seqhist.html | 2 +- docs/reference/merge_reads_command.html | 2 +- docs/reference/orient_primers.html | 2 +- docs/reference/plot_post_trim_qc.html | 2 +- docs/reference/plot_qc.html | 2 +- docs/reference/prep_abund_matrix.html | 2 +- docs/reference/prepare_metadata_table.html | 2 +- docs/reference/prepare_reads.html | 4 ++-- docs/reference/primer_check.html | 2 +- docs/reference/process_single_barcode.html | 2 +- docs/reference/read_fastq.html | 2 +- docs/reference/read_parameters.html | 2 +- docs/reference/read_prefilt_fastq.html | 2 +- docs/reference/remove_ns.html | 2 +- docs/reference/run_cutadapt.html | 2 +- docs/reference/setup_directories.html | 2 +- docs/search.json | 2 +- vignettes/Heatree demonstration rps10-1.png | Bin 89349 -> 88449 bytes 56 files changed, 76 insertions(+), 76 deletions(-) diff --git a/docs/404.html b/docs/404.html index bc240b0..7ef2137 100644 --- a/docs/404.html +++ b/docs/404.html @@ -87,7 +87,7 @@