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custom pattern not giving domain positions #22
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Hi @savipuray , thanks for the comments! Have you included the custom motif of interest in the Here's an excerpt of how to do the effector summary from the help page of the
Hope this helps! Javier. |
Hi Javier, Thanks for you message. I tried doing what you said. For example I used the following commands with your test data I tried the same with my data with the REGEX pattern "^\w{10,40}\w{1,96}Q\wLR\w{1,40}[ED][ED][RK]". It still gives '1' as the motif position and does not separate the positions and numbers of the QXLR and EER-like motifs like it does for the "RxLR" function. Sorry for the long message, |
Hi,
EffectR is a brilliant package for identifying effectors.
I just had a question regarding the identification of proteins with custom motifs. For some reason, when I use a custom pattern, the resulting table does not give the domain numbers and positions. I was wondering if there is some way to fix this.
Thank you!
Best,
Savithri
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