examplereports.qmd

---
title: "Example Reports"
editor: visual
---

## Example 1 - xanthomonas

<a href="https://grunwaldlab.github.io/pathogensurveillance_documentation/xanthomonas" target="_blank">example 1 report</a>

> Iruegas-Bocardo, Fernanda, et al. "Whole genome sequencing-based tracing of a 2022 introduction and outbreak of Xanthomonas hortorum pv. pelargonii." Phytopathology® 113.6 (2023): 975-984.

## Example 2 - mycobacterium

<a href="https://grunwaldlab.github.io/pathogensurveillance_documentation/mycobacteroides_small" target="_blank">example 2 report</a>

> Bryant, Josephine M., et al. "Population-level genomics identifies the emergence and global spread of a human transmissible multidrug-resistant nontuberculous mycobacterium." Science (New York, NY) 354.6313 (2016): 751.