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segalign crashes while aligning final against final reference block #56

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spo-colossal opened this issue Aug 15, 2022 · 1 comment
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@spo-colossal
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I received this error message during the alignment against the final reference block suggesting an illegal memory access. Would there be any quick way to align the final reference block without starting over (i.e. just pulling the fasta headers in ref_block_n.name and potentially all of the query blocks and treating them as a "genome" input)?

Error: cudaMemcpy of 4 bytes for num_anchors failed with error " invalid argument "
terminate called after throwing an instance of 'thrust::system::system_error'
what(): CUDA free failed: cudaErrorCudartUnloading: driver shutting down
/usr/local/bin/run_segalign: line 197: 19477 Aborted stdbuf -oL segalign $refPath $queryPath $DATA_FOLDER $optionalArguments

@gsneha26
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gsneha26 commented Nov 7, 2022

Can you point me to the genomes with which you received the error?

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