From 925cc15f58f53c1066fb868db079cb126425c0d8 Mon Sep 17 00:00:00 2001 From: Emilio Righi <85154159+emiliorighi@users.noreply.github.com> Date: Sun, 17 Sep 2023 09:59:36 +0200 Subject: [PATCH] Update main.yml --- .github/workflows/main.yml | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml index 330a64e..5b3c8ad 100644 --- a/.github/workflows/main.yml +++ b/.github/workflows/main.yml @@ -62,13 +62,13 @@ jobs: # Process the input file and create the output file while IFS=$'\t' read -r col1 rest_of_line; do - if [[ "$added_rows" -ge 200 ]]; then - break - fi - if [[ "$col1" == "Assembly Accession" ]]; then - continue - fi - url="https://www.ebi.ac.uk/ena/browser/api/fasta/$col1?download=true" # Modify this URL format as needed + if [[ "$added_rows" -ge 200 ]]; then + break + fi + if [[ "$col1" == "Assembly Accession" ]]; then + continue + fi + url="https://www.ebi.ac.uk/ena/browser/api/fasta/$col1?download=true" if url_exists "$url"; then url_to_add="$url&gzip=true" echo "$url_to_add"