From 0d71a34aad2e1479cd136d6b64f4f2f9228f8ab4 Mon Sep 17 00:00:00 2001 From: Emilio Righi Date: Thu, 2 Nov 2023 13:14:50 +0100 Subject: [PATCH] fix param file publishDir --- subworkflows/parameter_file_creation/main.nf | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/subworkflows/parameter_file_creation/main.nf b/subworkflows/parameter_file_creation/main.nf index 31e5804..58a0d4d 100644 --- a/subworkflows/parameter_file_creation/main.nf +++ b/subworkflows/parameter_file_creation/main.nf @@ -7,7 +7,7 @@ process createParamFile { tag "${id}" - publishDir("${params.OUTPUT}/${taxid}", mode : 'copy', enabled: params.store_param_files) + publishDir("${output_dir}/${taxid}", mode : 'copy', enabled: params.store_param_files) input: tuple val(id), val(taxid), path(acceptor_pwm), path(donor_pwm), path(start_pwm), path(stop_pwm), val(params_list), path(initial_probability_matrix), path(transition_probability_matrix)