From 511182dfb16726d9986e991f2a0fdfa6469406f5 Mon Sep 17 00:00:00 2001
From: FerriolCalvet <ferriolcalvet@gmail.com>
Date: Wed, 25 Jan 2023 19:37:30 +0100
Subject: [PATCH] fix typos

---
 README.md | 4 ++--
 main.nf   | 4 ++--
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/README.md b/README.md
index fcfbbed..d233bf3 100644
--- a/README.md
+++ b/README.md
@@ -20,7 +20,7 @@ This pipeline requires the compressed genome assembly and the taxid of the speci
 ```
 export NXF_VER=22.04.4
 nextflow run guigolab/geneidx -profile <docker/singularity>
-                                        --assembly <GENOME>.fa,gz
+                                        --genome <GENOME>.fa.gz
                                         --taxid <TAXID>
                                         --outdir <OUTPUT_directory>
 ```
@@ -31,7 +31,7 @@ git clone https://github.com/guigolab/geneidx.git
 cd geneidx
 export NXF_VER=22.04.4
 nextflow run main.nf -profile <docker/singularity>
-                      --assembly <GENOME>.fa.gz
+                      --genome <GENOME>.fa.gz
                       --taxid <TAXID>
                       --outdir <OUTPUT_directory>
 ```
diff --git a/main.nf b/main.nf
index c466694..6944351 100755
--- a/main.nf
+++ b/main.nf
@@ -22,7 +22,7 @@ params.help             = false
 
 // this prints the input parameters
 log.info """
-GENEID+BLASTx - NextflowPipeline
+GeneidX
 =============================================
 output			: ${params.output}
 genome			: ${params.genome}
@@ -32,7 +32,7 @@ taxon			: ${params.taxid}
 
 // this prints the help in case you use --help parameter in the command line and it stops the pipeline
 if (params.help) {
-    log.info 'This is the GeneidX test pipeline in Nextflow'
+    log.info 'This is the GeneidX pipeline in Nextflow'
     log.info 'Please define the genome file and the taxid of the species.\n'
     log.info 'To define additional parameters checkout the params.config file.\n'
     log.info '\n'