From 70f6612626201362fd946b201f8df5898aba8005 Mon Sep 17 00:00:00 2001
From: Max Schelker <mschelker@merrimackpharma.com>
Date: Wed, 18 Nov 2015 11:48:08 -0500
Subject: [PATCH] adds options for docker so that created files are no longer
 owned by root

---
 nextflow.config | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/nextflow.config b/nextflow.config
index 91cbb92..e5d7499 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -4,6 +4,9 @@ manifest.mainScript = 'grape-pipeline.nf'
 //Use Docker by default
 docker {
     enabled = true
+    sudo = false
+    fixOwnership = true
+    runOptions = "-u `id -u $USER`"
 }
 
 // Process configuration